Pre_GI: BLASTP Hits

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Query: NC_016582:11672500:11681248 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 11681248, End: 11682057, Length: 810

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013510:1295439:129712012971201298013894Thermomonospora curvata DSM 43183, complete genome1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-gluc opyranosidedeacetylase6e-37154
NC_014165:3559305:356047935604793561387909Thermobispora bispora DSM 43833 chromosome, complete genome1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-gluc opyranosidedeacetylase9e-36150
NC_007333:537292:554504554504555364861Thermobifida fusca YX, complete genomehypothetical protein3e-34145
NC_016111:4245876:426262642626264263528903Streptomyces cattleya NRRL 8057, complete genomeN-acetyl-1-D-myo-inosityl-2-amino-26e-33140
NC_021177:5419620:5443131544313154441501020Streptomyces fulvissimus DSM 40593, complete genome1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase3e-28125
NC_012704:652589:674752674752675690939Corynebacterium kroppenstedtii DSM 44385, complete genomemycothiol conjugate amidase5e-23108
NC_016111:4115097:411827741182774119152876Streptomyces cattleya NRRL 8057, complete genomehypothetical protein2e-22105
NC_013093:832971:848250848250849101852Actinosynnema mirum DSM 43827, complete genome1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-gluc opyranosidedeacetylase5e-22104
NC_017093:835260:856780856780857661882Actinoplanes missouriensis 431, complete genomeputative mycothiol conjugate amidase1e-21103
NC_019673:8734993:873429287342928735029738Saccharothrix espanaensis DSM 44229 complete genomeLmbE-like protein3e-21102
NC_008278:6717485:6739787673978767409891203Frankia alni ACN14a, complete genomehypothetical protein1e-1893.6
NC_013169:2581500:259381525938152594645831Kytococcus sedentarius DSM 20547, complete genomeuncharacterized LmbE-like protein2e-1892.8
NC_012590:1004816:101969110196911020581891Corynebacterium aurimucosum ATCC 700975, complete genomemycothiol conjugate amidase6e-1891.7
NC_013946:2854219:285743928574392858254816Meiothermus ruber DSM 1279 chromosome, complete genomeLmbE family protein3e-1789.4
NC_014221:3137952:315387331538733154697825Truepera radiovictrix DSM 17093 chromosome, complete genomeLmbE family protein8e-1374.3
NC_014666:1969602:197497219749721975841870Frankia sp. EuI1c chromosome, complete genomeLmbE family protein2e-1066.2
NC_017186:5184000:519963251996325200435804Amycolatopsis mediterranei S699 chromosome, complete genomeLmbE family protein3e-1065.9
NC_014318:5183975:519959851995985200392795Amycolatopsis mediterranei U32 chromosome, complete genomeLmbE family protein3e-1065.9
NC_001263:72681:817698176982482714Deinococcus radiodurans R1 chromosome 1, complete sequencehypothetical protein9e-0754.3