Pre_GI: BLASTP Hits

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Query: NC_016582:11535695:11552456 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 11552456, End: 11553355, Length: 900

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015410:3003417:300451430045143005404891Pseudomonas mendocina NK-01 chromosome, complete genometaurine catabolic dioxygenase protein4e-31135
NC_012856:737170:792906792906793808903Ralstonia pickettii 12D chromosome 1, complete genomeTaurine dioxygenase3e-29129
NC_004578:5916711:591671159167115917607897Pseudomonas syringae pv. tomato str. DC3000, complete genomedioxygenase, TauD/TfdA family3e-29129
NC_015138:4666544:468495346849534685873921Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completetaurine dioxygenase5e-29128
NC_015380:717990:731893731893732744852Candidatus Pelagibacter sp. IMCC9063 chromosome, complete genomealpha-ketoglutarate-dependent taurine dioxygenase8e-25114
NC_014355:880856:902742902742903620879Candidatus Nitrospira defluvii, complete genometaurine dioxygenase, 2-oxoglutarate-dependent2e-2099.4
NC_009921:3473854:349752734975273498372846Frankia sp. EAN1pec, complete genomeTaurine catabolism dioxygenase TauD/TfdA3e-2099
NC_020829:1840281:184107518410751841968894Pseudomonas denitrificans ATCC 13867, complete genomeputative alpha-ketoglutarate-dependent taurine dioxygenase2e-1996.3
NC_010162:10442904:104630291046302910463979951Sorangium cellulosum 'So ce 56', complete genometaurine dioxygenase9e-1994.4
NC_013422:991500:102522710252271026138912Halothiobacillus neapolitanus c2, complete genomeTaurine catabolism dioxygenase TauD/TfdA3e-1892.4
NC_009921:5609770:562001156200115620859849Frankia sp. EAN1pec, complete genomeTaurine dioxygenase1e-1790.5
NC_009921:3999040:399904039990403999885846Frankia sp. EAN1pec, complete genomeTaurine catabolism dioxygenase TauD/TfdA4e-1789
NC_009921:5609770:563888656388865639716831Frankia sp. EAN1pec, complete genomeTaurine dioxygenase1e-1687
NC_015723:1047418:105757310575731058484912Cupriavidus necator N-1 chromosome 2, complete sequencealpha-ketoglutarate-dependent taurine dioxygenase TauD1e-1687
NC_016514:891772:934513934513935364852Enterobacter cloacae EcWSU1 chromosome, complete genomealpha-ketoglutarate-dependent taurine dioxygenase2e-1686.3
NC_017904:4203257:421588042158804216710831Mycobacterium sp. MOTT36Y chromosome, complete genometaurine catabolism dioxygenase TauD/TfdA2e-1583.6
NC_012982:2730000:273354327335432734379837Hirschia baltica ATCC 49814, complete genomeTaurine dioxygenase2e-1583.2
NC_009921:593665:598589598589599428840Frankia sp. EAN1pec, complete genomeTaurine catabolism dioxygenase TauD/TfdA4e-1582.4
NC_007005:5154317:5166566516656651675791014Pseudomonas syringae pv. syringae B728a, complete genomesimilar to Probable taurine catabolism dioxygenase6e-1581.6
NC_016935:4813916:481391648139164814836921Paenibacillus mucilaginosus 3016 chromosome, complete genometaurine dioxygenase1e-1480.9
NC_015136:1301576:132337713233771324309933Burkholderia sp. CCGE1001 chromosome 1, complete sequenceTaurine dioxygenase1e-1377
NC_016114:7116141:711614171161417117031891Streptomyces flavogriseus ATCC 33331 chromosome, complete genometaurine dioxygenase2e-1376.6
NC_009921:1668306:171164117116411712471831Frankia sp. EAN1pec, complete genomeTaurine catabolism dioxygenase TauD/TfdA6e-1375.1
NC_008314:477722:482026482026482931906Ralstonia eutropha H16 chromosome 2, complete sequencetaurine catabolism dioxygenase1e-1273.9
NC_009921:522000:549167549167550003837Frankia sp. EAN1pec, complete genomeTaurine catabolism dioxygenase TauD/TfdA1e-1273.6
NC_007005:2686551:272990027299002730739840Pseudomonas syringae pv. syringae B728a, complete genomeTaurine catabolism dioxygenase TauD/TfdA2e-1273.6
NC_020063:2230000:2233915223391522349341020Enterobacteriaceae bacterium strain FGI 57, complete genomeputative taurine catabolism dioxygenase2e-1273.2
NC_015138:4666544:468617746861774687133957Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completetaurine dioxygenase3e-1272.8
NC_002944:4147431:415029941502994151075777Mycobacterium avium subsp. paratuberculosis K-10, complete genomehypothetical protein1e-1067.4
NC_007435:2701242:2720344272034427214891146Burkholderia pseudomallei 1710b chromosome II, complete sequenceputative alpha-ketoglutarate-dependent taurine dioxygenase1e-1067
NC_006351:881655:901100901100901996897Burkholderia pseudomallei K96243 chromosome 2, complete sequencealpha-ketoglutarate-dependent taurine dioxygenase1e-1067
NC_015259:1512563:152666215266621527558897Polymorphum gilvum SL003B-26A1 chromosome, complete genomePutative taurine dioxygenase protein6e-1065.1
NC_017249:7917586:797650879765087977425918Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein1e-0964.3
NC_004463:2262467:230076323007632301680918Bradyrhizobium japonicum USDA 110, complete genomeprobable dioxygenase1e-0964.3
NC_005125:2811986:284096928409692841739771Gloeobacter violaceus PCC 7421, complete genomeprobable taurine dioxygenase3e-0962.8
NC_010170:1152131:116384111638411164485645Bordetella petrii, complete genometaurine dioxygenase2e-0756.6