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Query: NC_016582:11535695:11541312 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 11541312, End: 11544062, Length: 2751

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015186:1126830:1156414115641411591972784Acidiphilium multivorum AIU301, complete genomehypothetical protein3e-56220
NC_015850:2451957:2460757246075724635372781Acidithiobacillus caldus SM-1 chromosome, complete genomecell surface antigen SLP55e-46186
NC_015942:668775:6831066831066859192814Acidithiobacillus ferrivorans SS3 chromosome, complete genomeSMP-30/gluconolaconase/LRE-like region-containing protein1e-44182
NC_011761:2031876:2053341205334120561782838Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completehypothetical protein1e-54215
NC_011206:1917408:1938873193887319417102838Acidithiobacillus ferrooxidans ATCC 53993, complete genomelipoprotein, putative1e-54215
NC_012483:3144689:3155018315501831566851668Acidobacterium capsulatum ATCC 51196, complete genomeputative phospholipase C4e-0654.3
NC_008782:1510000:1529246152924615302921047Acidovorax sp. JS42, complete genome40-residue YVTN family beta-propeller repeat protein2e-0862.4
NC_015422:2858228:2876953287695328779991047Alicycliphilus denitrificans K601 chromosome, complete genome40-residue YVTN family beta-propeller repeat-containing protein4e-0861.2
NC_018748:1443176:1461353146135314640612709Emticicia oligotrophica DSM 17448 chromosome, complete genomephosphoesterase4e-88326
NC_008278:5855401:5857482585748258609313450Frankia alni ACN14a, complete genomeGlycine-rich cell wall structural protein precursor (partial match)5e-0860.8
NC_011146:1699702:1710822171082217137972976Geobacter bemidjiensis Bem, complete genomehypothetical protein3e-55217
NC_016631:4530000:4533359453335945360972739Granulicella mallensis MP5ACTX8 chromosome, complete genome40-residue YVTN family beta-propeller repeat-containing protein3e-98360
NC_003552:3862275:3874976387497638764391464Methanosarcina acetivorans C2A, complete genomesurface antigen gene3e-1171.6
NC_003552:576500:5913595913595928071449Methanosarcina acetivorans C2A, complete genomesurface antigen gene3e-0655.1
NC_007355:970670:9786529786529819363285Methanosarcina barkeri str. fusaro chromosome 1, complete sequenceputative surface layer protein8e-0756.6
NC_003901:500500:5074305074305086891260Methanosarcina mazei Go1, complete genomeputative surface layer protein1e-0759.3
NC_020389:415500:4232174232174244761260Methanosarcina mazei Tuc01, complete genomeSurface layer protein1e-0759.3
NC_020389:1730376:1739312173931217425843273Methanosarcina mazei Tuc01, complete genomehypothetical protein1e-0965.9
NC_007947:2447635:245758224575822458535954Methylobacillus flagellatus KT, complete genome40-residue YVTN beta-propeller repeat2e-0862.4
NC_008344:49039:6488964889659381050Nitrosomonas eutropha C91, complete genome40-residue YVTN family beta-propeller repeat protein2e-0862
NC_013061:2775623:2778967277896727802831317Pedobacter heparinus DSM 2366, complete genomeacid phosphatase2e-0655.8