Some Help

Query: NC_016582:10638524:10644085 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 10644085, End: 10644528, Length: 444

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia

SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015514:181773:185537185537185986450Cellulomonas fimi ATCC 484 chromosome, complete genomehypothetical protein6e-23105
NC_012912:777592:780830780830781300471Dickeya zeae Ech1591, complete genomehypothetical protein2e-1064.3
NC_015711:7471500:749487674948767495331456Myxococcus fulvus HW-1 chromosome, complete genomehypothetical protein4e-1063.5
NC_019757:2243796:225775122577512258248498Cylindrospermum stagnale PCC 7417, complete genomeconserved hypothetical phage tail region protein2e-0960.8
NC_011898:1802971:182594818259481826391444Clostridium cellulolyticum H10, complete genomehypothetical protein9e-0855.8
NC_011898:1802971:182714918271491827622474Clostridium cellulolyticum H10, complete genomehypothetical protein2e-0754.7
NC_016599:1412000:143176614317661432227462Owenweeksia hongkongensis DSM 17368 chromosome, complete genomeconserved hypothetical phage tail region protein4e-0753.5
NC_012032:2925000:294229729422972942821525Chloroflexus sp. Y-400-fl, complete genomeconserved hypothetical phage tail protein1e-0652.4
NC_010995:3604695:362720736272073627668462Cellvibrio japonicus Ueda107, complete genomeconserved hypothetical phage tail region protein subfamily1e-0652