Pre_GI: BLASTP Hits

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Query: NC_016582:10287865:10293846 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 10293846, End: 10295162, Length: 1317

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017904:1725180:1737464173746417387561293Mycobacterium sp. MOTT36Y chromosome, complete genomehypothetical protein8e-55214
NC_011000:1262324:1263269126326912645521284Burkholderia cenocepacia J2315 chromosome 1, complete sequencehypothetical protein1e-51204
NC_007974:138176:1648201648201660071188Ralstonia metallidurans CH34 chromosome 2, complete sequencehypothetical protein1e-50200
NC_008786:5128363:5143588514358851447691182Verminephrobacter eiseniae EF01-2, complete genomehypothetical protein1e-29131