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Query: NC_016582:10287865:10292621 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 10292621, End: 10293799, Length: 1179

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016001:224213:2454582454582466151158Flavobacterium branchiophilum, complete genomeHomogentisate 1,2-dioxygenase3e-77289
NC_010501:908000:9089009089009102011302Pseudomonas putida W619, complete genomehomogentisate 1,2-dioxygenase1e-0757.8
NC_020125:1:1793179329561164Riemerella anatipestifer RA-CH-2, complete genomeHomogentisate 1,2-dioxygenase4e-81301
NC_015594:410454:4448674448674461771311Sphingobium chlorophenolicum L-1 chromosome chromosome 2, completeHomogentisate 1,2-dioxygenase2e-0860.8
NC_013769:826933:8269338269338280871155Sulfolobus islandicus L.D.8.5 chromosome, complete genomehomogentisate 1,2-dioxygenase1e-67257
NC_017904:1763015:1785793178579317869051113Mycobacterium sp. MOTT36Y chromosome, complete genomehomogentisate 1,2-dioxygenase2e-22106
NC_007953:1043957:1060520106052010618091290Burkholderia xenovorans LB400 chromosome 3, complete sequenceHomogentisate 1,2-dioxygenase (HmgA)2e-1377
NC_007951:1928906:1930860193086019321551296Burkholderia xenovorans LB400 chromosome 1, complete sequenceHomogentisate 1,2-dioxygenase (HmgA)3e-0756.6
NC_012589:633500:6494066494066505601155Sulfolobus islandicus L.S.2.15, complete genomehomogentisate 12-dioxygenase6e-67254
NC_012623:1874348:1874348187434818755021155Sulfolobus islandicus Y.N.15.51 chromosome, complete genomehomogentisate 12-dioxygenase1e-67257
NC_015638:923660:9341729341729353321161Lacinutrix sp. 5H-3-7-4 chromosome, complete genomehomogentisate 12-dioxygenase2e-83309
NC_014210:2277971:2280829228082922820371209Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,homogentisate 12-dioxygenase2e-127455
NC_009901:2272206:2285111228511122862711161Shewanella pealeana ATCC 700345, complete genomehomogentisate 12-dioxygenase3e-68259