Pre_GI: BLASTP Hits

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Query: NC_016582:10287865:10290187 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 10290187, End: 10290933, Length: 747

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015566:2420287:243507724350772435829753Serratia sp. AS12 chromosome, complete genomeAsp/Glu/hydantoin racemase3e-76285
NC_015567:2420169:243495924349592435711753Serratia sp. AS9 chromosome, complete genomeAsp/Glu/hydantoin racemase3e-76285
NC_014098:2332938:234879923487992349566768Bacillus tusciae DSM 2912 chromosome, complete genomeAsp/Glu/hydantoin racemase3e-74278
NC_007974:138176:170270170270171028759Ralstonia metallidurans CH34 chromosome 2, complete sequenceAsp/Glu racemase1e-64246
NC_000961:888000:897298897298898014717Pyrococcus horikoshii OT3, complete genomearylmalonate decarboxylase4e-29128
NC_015680:663341:663341663341664051711Pyrococcus yayanosii CH1 chromosome, complete genomearylmalonate decarboxylase9e-29127
NC_016051:766683:782487782487783200714Thermococcus sp. AM4 chromosome, complete genomearylmalonate decarboxylase1e-26119
NC_012804:1372667:139181413918141392527714Thermococcus gammatolerans EJ3, complete genomeMaleate cis-trans isomerase (maiA)2e-26119
NC_002754:2667322:268418926841892684917729Sulfolobus solfataricus P2, complete genomeMaleate cis-trans isomerase, probable (maiA)5e-23107
NC_011894:957897:965885965885966604720Methylobacterium nodulans ORS 2060, complete genomeAsp/Glu/hydantoin racemase1e-1789.7
NC_014910:1050706:106376310637631064500738Alicycliphilus denitrificans BC chromosome, complete genomeasp/glu/hydantoin racemase3e-1582
NC_008578:1827605:184096018409601841652693Acidothermus cellulolyticus 11B, complete genomeAsp/Glu racemase5e-1581.6
NC_018643:857911:901740901740902486747Alpha proteobacterium HIMB5 chromosome, complete genomeAsp/Glu/Hydantoin racemase6e-1581.3
NC_014011:527681:532171532171532890720Aminobacterium colombiense DSM 12261 chromosome, complete genomeAsp/Glu/hydantoin racemase2e-1273.2
NC_016642:1913432:193752219375221938385864Pseudovibrio sp. FO-BEG1 chromosome, complete genomeAsp/Glu/Hydantoin racemase family protein9e-1270.5
NC_014217:2987450:299792829979282998665738Starkeya novella DSM 506 chromosome, complete genomeAsp/Glu/hydantoin racemase5e-1168.2
NC_003911:1791878:180906418090641809789726Silicibacter pomeroyi DSS-3, complete genomeAsp/Glu/Hydantoin racemase family protein8e-1167.4
NC_014011:527681:534560534560535285726Aminobacterium colombiense DSM 12261 chromosome, complete genomeAsp/Glu/hydantoin racemase9e-0754.3