Pre_GI: BLASTP Hits

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Query: NC_016582:10287865:10287865 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 10287865, End: 10289544, Length: 1680

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005966:159232:1650441650441667441701Acinetobacter sp. ADP1, complete genomeNAD-linked malate dehydrogenase, Rossman fold2e-138492
NC_013861:469500:4911494911494928581710Legionella longbeachae NSW150, complete genomemalate dehydrogenase, (decarboxylating, NAD-requiring) (malic enzyme)3e-136485
NC_020063:2230000:2230359223035922320531695Enterobacteriaceae bacterium strain FGI 57, complete genomemalic enzyme1e-135484
NC_013941:1857724:1879501187950118812251725Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeNAD-dependent malic enzyme2e-132473
NC_011750:1809943:1831114183111418328111698Escherichia coli IAI39 chromosome, complete genomemalate dehydrogenase2e-132473
NC_007005:1738500:1756231175623117579521722Pseudomonas syringae pv. syringae B728a, complete genomeMalate dehydrogenase (oxaloacetate decarboxylating) (NADP+)3e-132472
NC_012880:2871480:2871480287148028731771698Dickeya dadantii Ech703, complete genomeMalate dehydrogenase (oxaloacetate-decarboxylating)8e-132471
NC_013508:1262333:1262333126233312640301698Edwardsiella tarda EIB202, complete genomemalate dehydrogenase (oxaloacetate-decarboxylating)9e-132471
NC_014500:1862000:1915571191557119172681698Dickeya dadantii 3937 chromosome, complete genomemalate dehydrogenase, (decarboxylating, NAD-requiring) (malic enzyme)2e-131469
NC_002695:2056545:2075215207521520769391725Escherichia coli O157:H7 str. Sakai, complete genomeNAD-linked malate dehydrogenase4e-131468
NC_011353:1971145:1989815198981519915121698Escherichia coli O157:H7 str. EC4115 chromosome, complete genomemalate dehydrogenase4e-131468
NC_013008:1971662:1988791198879119904881698Escherichia coli O157:H7 str. TW14359 chromosome, complete genomemalate dehydrogenase4e-131468
NC_008228:816000:8187998187998204931695Pseudoalteromonas atlantica T6c, complete genomeMalate dehydrogenase (oxaloacetate decarboxylating) (NADP+)5e-131468
NC_006526:1976779:2009459200945920111621704Zymomonas mobilis subsp. mobilis ZM4, complete genomemalic enzyme6e-131468
NC_012912:2901021:2903703290370329054001698Dickeya zeae Ech1591, complete genomeMalate dehydrogenase (oxaloacetate-decarboxylating)9e-131467
NC_004578:4432983:4438161443816144398821722Pseudomonas syringae pv. tomato str. DC3000, complete genomemalate dehydrogenase1e-130467
NC_012917:1740542:1744084174408417457811698Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeMalate dehydrogenase (oxaloacetate-decarboxylating)1e-129464
NC_005139:2201820:2264429226442922661081680Vibrio vulnificus YJ016 chromosome I, complete sequencemalic enzyme1e-127457
NC_010511:1351000:1365438136543813671471710Methylobacterium sp. 4-46 chromosome, complete genomemalate dehydrogenase1e-127457
NC_014483:3235968:3252383325238332541011719Paenibacillus polymyxa E681 chromosome, complete genomeProbable NAD-dependent malic enzyme 2 (NAD-ME 2)1e-121437
NC_014622:3525017:3542720354272035444441725Paenibacillus polymyxa SC2 chromosome, complete genomemalate dehydrogenase3e-121436
NC_016941:807155:8105388105388121721635Staphylococcus aureus subsp. aureus MSHR1132, complete genomeputative malolactic enzyme3e-108392
NC_016804:2560000:2561568256156825632141647Mycobacterium bovis BCG str. Mexico chromosome, complete genomeputative [NAD] dependent malate oxidoreductase1e-107390
NC_012207:2573562:2574975257497525766211647Mycobacterium bovis BCG str. Tokyo 172, complete genomeputative [NAD] dependent malate oxidoreductase1e-107390
NC_004757:427483:4754004754004771421743Nitrosomonas europaea ATCC 19718, complete genomeputative malate oxidoreductase (malic enzyme)3e-104379
NC_014311:1309562:1325508132550813271721665Ralstonia solanacearum PSI07 chromosome, complete genomemalate dehydrogenase2e-102373
NC_001263:2574755:2590824259082425925601737Deinococcus radiodurans R1 chromosome 1, complete sequencemalate oxidoreductase5e-102372
NC_013740:15401:1540115401170441644Acidaminococcus fermentans DSM 20731, complete genomeMalate dehydrogenase (oxaloacetate- decarboxylating)2e-98360
NC_009785:387910:4039814039814056061626Streptococcus gordonii str. Challis substr. CH1, complete genomemalate oxidoreductase1e-94347
NC_020995:3252500:3269077326907732706991623Enterococcus casseliflavus EC20, complete genomemalolactic enzyme3e-94346
NC_017059:376226:3940493940493963822334Rhodospirillum photometricum DSM 122, complete genomemalate dehydrogenase1e-0862
NC_009439:574437:5770145770145782821269Pseudomonas mendocina ymp, complete genomemalate dehydrogenase1e-0862
NC_010511:1351000:1367306136730613696152310Methylobacterium sp. 4-46 chromosome, complete genomemalic enzyme2e-0861.2
NC_009053:553298:5553225553225565901269Actinobacillus pleuropneumoniae L20, complete genomeNADP-dependent malic enzyme (NADP-ME)2e-0861.2
NC_020291:4033000:4034879403487940360631185Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeNAD-dependent malic enzyme2e-0861.2
NC_015410:617020:6193226193226205901269Pseudomonas mendocina NK-01 chromosome, complete genomemalate dehydrogenase2e-0861.6
NC_014931:4985500:4985729498572949880322304Variovorax paradoxus EPS chromosome, complete genomemalic protein NAD-binding protein2e-0861.6
NC_004663:2437760:2472243247224324745342292Bacteroides thetaiotaomicron VPI-5482, complete genomeNADP-dependent malate dehydrogenase3e-0860.8
NC_004668:3184319:3202675320267532038471173Enterococcus faecalis V583, complete genomemalic enzyme family protein8e-0859.3
NC_015573:162000:1765121765121777681257Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeMalate dehydrogenase9e-0858.9
NC_015740:636667:6402536402536415211269Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completemalic enzyme4e-0757
NC_009434:608765:6123516123516136191269Pseudomonas stutzeri A1501, complete genomemalic enzyme4e-0757