Pre_GI: BLASTP Hits

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Query: NC_016582:10227196:10259997 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 10259997, End: 10260311, Length: 315

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014118:987889:100352110035211004318798Burkholderia sp. CCGE1002 chromosome chromosome 2, complete2-oxopent-4-enoate hydratase7e-1372.8
NC_011666:1572487:159618215961821596976795Methylocella silvestris BL2, complete genome4-oxalocrotonate decarboxylase2e-1167.4
NC_009921:3384116:339976933997693400635867Frankia sp. EAN1pec, complete genome4-oxalocrotonate decarboxylase2e-1064.7
NC_009512:3251545:326685632668563267662807Pseudomonas putida F1, complete genome4-oxalocrotonate decarboxylase1e-0962
NC_009328:3241166:325479832547983255583786Geobacillus thermodenitrificans NG80-2 chromosome, complete genome2-hydroxypenta-2,4-dienoate hydratase1e-0961.6
NC_015136:912276:927357927357928166810Burkholderia sp. CCGE1001 chromosome 1, complete sequence2-oxopent-4-enoate hydratase1e-0858.5
NC_015565:2027279:204694720469472047720774Desulfotomaculum carboxydivorans CO-1-SRB chromosome, complete2-oxopent-4-enoate hydratase3e-0857.4
NC_007951:3631772:363559236355923636401810Burkholderia xenovorans LB400 chromosome 1, complete sequence2-oxopent-4-enoate hydratase3e-0857
NC_016147:1825827:183918318391831839965783Pseudoxanthomonas spadix BD-a59 chromosome, complete genome2-hydroxypenta-2,4-dienoate hydratase5e-0856.6
NC_016584:593954:608817608817609590774Desulfosporosinus orientis DSM 765 chromosome, complete genome2-keto-4-pentenoate hydratase5e-0856.2
NC_015573:649800:649800649800650582783Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genome2-oxopent-4-enoate hydratase8e-0855.8
NC_007348:2519447:252177825217782522560783Ralstonia eutropha JMP134 chromosome 2, complete sequence4-oxalocrotonate decarboxylase1e-0755.5
NC_016947:1480282:148972514897251490522798Mycobacterium intracellulare MOTT-02 chromosome, complete genome4-oxalocrotonate decarboxylase1e-0755.5
NC_009077:4419084:444432444443244445118795Mycobacterium sp. JLS, complete genome4-oxalocrotonate decarboxylase1e-0755.5
NC_016604:3137694:314834131483413149144804Mycobacterium rhodesiae NBB3 chromosome, complete genome2-keto-4-pentenoate hydratase1e-0755.1
NC_010125:2813653:282691828269182827715798Gluconacetobacter diazotrophicus PAl 5, complete genomeputative 2-keto-4-pentenoate hydratase1e-0755.1
NC_021171:2019755:204179920417992042578780Bacillus sp. 1NLA3E, complete genome2-hydroxypenta-2,4-dienoate hydratase2e-0754.7
NC_017506:1100679:114030911403091141094786Marinobacter adhaerens HP15 chromosome, complete genomehydratase/decarboxylase4e-0753.5
NC_016147:1788219:180330618033061804088783Pseudoxanthomonas spadix BD-a59 chromosome, complete genome2-hydroxypenta-2,4-dienoate hydratase7e-0752.8
NC_008699:2294361:230041623004162301231816Nocardioides sp. JS614, complete genome4-oxalocrotonate decarboxylase1e-0652.4
NC_007973:1411714:143483514348351435623789Ralstonia metallidurans CH34 chromosome 1, complete sequenceHydratase/decarboxylase9e-0752.4
NC_014831:2133060:213626121362612137052792Thermaerobacter marianensis DSM 12885 chromosome, complete genome2-oxopent-4-enoate hydratase1e-0652
NC_018697:505915:519330519330520115786Cycloclasticus sp. P1 chromosome, complete genome2-hydroxypent-2,4-dienoate hydratase2e-0651.6
NC_016582:2069677:207209920720992072893795Streptomyces bingchenggensis BCW-1 chromosome, complete genome2-oxopent-4-enoate hydratase3e-0650.4
NC_007503:1111457:113832611383261139114789Carboxydothermus hydrogenoformans Z-2901, complete genomehydratase/decarboxylase family protein3e-0650.4
NC_016887:511034:531050531050531835786Nocardia cyriacigeorgica GUH-2, complete genome2-keto-4-pentenoate hydratase 3 (2-hydroxypentadienoic acid hydratase )6e-0649.7
NC_011662:2320100:235137723513772352162786Thauera sp. MZ1T, complete genome2-oxopent-4-enoate hydratase7e-0649.3