Pre_GI: BLASTP Hits

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Query: NC_016582:10227196:10239861 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 10239861, End: 10241393, Length: 1533

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014479:736102:7497697497697513101542Bacillus subtilis subsp. spizizenii str. W23 chromosome, completelipoprotein7e-89328
NC_016047:876875:8925298925298940371509Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completelipoprotein LplA9e-89327
NC_017195:742298:7570477570477585551509Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completelipoprotein LplA1e-86320
NC_000964:764118:7788667788667803741509Bacillus subtilis subsp. subtilis str. 168, complete genomelipoprotein2e-86320
NC_019896:3281193:3283105328310532846131509Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeLipoprotein LplA3e-86319
NC_014976:2981777:2997425299742529989331509Bacillus subtilis BSn5 chromosome, complete genomelipoprotein4e-86319
NC_014639:227118:2408102408102423331524Bacillus atrophaeus 1942 chromosome, complete genomelipoprotein4e-85315
CP002207:227118:2408102408102423331524Bacillus atrophaeus 1942, complete genomelipoprotein4e-85315
UCMB5137:303641:3193183193183208411524Bacillus atrophaeus UCMB-5137lipoprotein2e-82306
NC_019897:1224798:1264380126438012660081629Thermobacillus composti KWC4 chromosome, complete genomesugar ABC transporter substrate-binding protein4e-72272
NC_015690:5263108:5277813527781352793961584Paenibacillus mucilaginosus KNP414 chromosome, complete genomefamily 1 extracellular solute-binding protein4e-66252
NC_016935:5017317:5032020503202050336031584Paenibacillus mucilaginosus 3016 chromosome, complete genomefamily 1 extracellular solute-binding protein4e-66252
NC_015690:2039215:2075053207505320765641512Paenibacillus mucilaginosus KNP414 chromosome, complete genomeputative multiple sugar transport system substrate-binding protein YtcQ9e-57221
NC_016935:2567039:2624595262459526261061512Paenibacillus mucilaginosus 3016 chromosome, complete genomeputative multiple sugar transport system substrate-binding protein YtcQ4e-56219
NC_015690:4592582:4617476461747646189781503Paenibacillus mucilaginosus KNP414 chromosome, complete genomehypothetical protein3e-46186
NC_015690:1967244:2005630200563020071381509Paenibacillus mucilaginosus KNP414 chromosome, complete genomefamily 1 extracellular solute-binding protein2e-43177
NC_020244:783125:797580797580798356777Bacillus subtilis XF-1, complete genomelipoprotein3e-32140
NC_015690:1818333:1827340182734018288901551Paenibacillus mucilaginosus KNP414 chromosome, complete genomefamily 1 extracellular solute-binding protein9e-25115
NC_016935:2347691:2357210235721023587601551Paenibacillus mucilaginosus 3016 chromosome, complete genomefamily 1 extracellular solute-binding protein9e-25115
NC_015690:3883243:3902653390265339042781626Paenibacillus mucilaginosus KNP414 chromosome, complete genomefamily 1 extracellular solute-binding protein8e-1685.5
NC_016935:1306472:1327748132774813293731626Paenibacillus mucilaginosus 3016 chromosome, complete genomefamily 1 extracellular solute-binding protein9e-1685.5
NC_020134:205000:2194692194692209261458Clostridium stercorarium subsp. stercorarium DSM 8532, completelipoprotein LipO1e-1275.1
NC_013406:3819577:3842729384272938443961668Paenibacillus sp. Y412MC10 chromosome, complete genomefamily 1 extracellular solute-binding protein6e-1272.8
NC_010001:986500:1001005100100510025761572Clostridium phytofermentans ISDg, complete genomeextracellular solute-binding protein family 12e-1171.2
NC_015732:684000:6981306981306997161587Spirochaeta caldaria DSM 7334 chromosome, complete genomeextracellular solute-binding protein family 12e-0964.3
NC_014915:1880748:1892356189235618940051650Geobacillus sp. Y412MC52 chromosome, complete genomeextracellular solute-binding protein family 19e-0962
NC_013411:2739989:2752418275241827540671650Geobacillus sp. Y412MC61, complete genomeextracellular solute-binding protein family 19e-0962
NC_009328:1867971:1876034187603418776771644Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeABC transporter substrate-binding protein4e-0860.1
NC_007333:1743890:1859713185971318613861674Thermobifida fusca YX, complete genomeABC-type sugar transport system periplasmic component5e-0859.7
NC_013406:3583474:3619295361929536208961602Paenibacillus sp. Y412MC10 chromosome, complete genomefamily 1 extracellular solute-binding protein6e-0859.3
NC_013172:466300:4821794821794838221644Brachybacterium faecium DSM 4810, complete genomeABC-type sugar transport system, periplasmic component1e-0758.5
NC_015690:4592582:4612557461255746141311575Paenibacillus mucilaginosus KNP414 chromosome, complete genomefamily 1 extracellular solute-binding protein5e-0756.2
NC_015152:2831566:2851234285123428528051572Spirochaeta sp. Buddy chromosome, complete genomeextracellular solute-binding protein family 11e-0655.1
NC_016641:1369424:1370725137072513719181194Paenibacillus terrae HPL-003 chromosome, complete genomefamily 1 extracellular solute-binding protein3e-0653.9
NC_016935:2347691:2403704240370424054431740Paenibacillus mucilaginosus 3016 chromosome, complete genomefamily 1 extracellular solute-binding protein4e-0653.1
NC_015690:1818333:1874016187401618756681653Paenibacillus mucilaginosus KNP414 chromosome, complete genomefamily 1 extracellular solute-binding protein5e-0653.1
NC_016641:3711972:3726839372683937284461608Paenibacillus terrae HPL-003 chromosome, complete genomefamily 1 extracellular solute-binding protein5e-0652.8