Pre_GI: BLASTP Hits

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Query: NC_016582:10227196:10235652 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 10235652, End: 10237691, Length: 2040

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015588:2468207:2490027249002724920872061Isoptericola variabilis 225 chromosome, complete genomeBeta-galactosidase2e-145516
NC_015275:4055148:4055148405514840571692022Clostridium lentocellum DSM 5427 chromosome, complete genomeBeta-galactosidase2e-133476
NC_013174:309943:3310793310793332142136Jonesia denitrificans DSM 20603, complete genomeBeta-galactosidase1e-129464
NC_007333:1743890:1871657187165718736481992Thermobifida fusca YX, complete genomebeta-galactosidase1e-128460
NC_019897:1577015:1614490161449016165232034Thermobacillus composti KWC4 chromosome, complete genomebeta-galactosidase5e-128458
NC_016582:11672500:1167304211673042116750512010Streptomyces bingchenggensis BCW-1 chromosome, complete genomebeta-galactosidase9e-125447
NC_011978:351465:3670623670623690802019Thermotoga neapolitana DSM 4359, complete genomeBeta-D-galactosidase1e-123444
NC_009848:3582384:3583616358361635856822067Bacillus pumilus SAFR-032, complete genomebeta-galactosidase8e-123441
NC_020291:902635:9044309044309065142085Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomebeta-galactosidase Pbg7e-118425
NC_014221:2188250:2195468219546821974772010Truepera radiovictrix DSM 17093 chromosome, complete genomeBeta-galactosidase1e-117424
NC_011898:2951670:2959323295932329613832061Clostridium cellulolyticum H10, complete genomeGlycoside hydrolase family 42 domain protein6e-117422
NC_016593:956839:9693259693259713852061Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completebeta-galactosidase ganA9e-117421
NC_010610:908452:9180399180399200992061Lactobacillus fermentum IFO 3956, complete genomebeta-galactosidase2e-107390
NC_014638:183115:1947071947071968872181Bifidobacterium bifidum PRL2010 chromosome, complete genometype II restriction-modification system restriction subunit2e-104380
NC_016631:1757788:1775869177586917779322064Granulicella mallensis MP5ACTX8 chromosome, complete genomebeta-galactosidase2e-94347
NC_014960:1910202:1910202191020219122022001Anaerolinea thermophila UNI-1, complete genomebeta-galactosidase7e-92338
NC_019974:3083899:3087972308797230899902019Natronococcus occultus SP4, complete genomebeta-galactosidase3e-85316
NC_016582:10227196:1024695210246952102481061155Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative beta-galactosidase2e-78293
NC_008543:127675:1285631285631305331971Burkholderia cenocepacia HI2424 chromosome 2, complete sequenceBeta-galactosidase5e-76285
NC_016582:7737930:7749706774970677518982193Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative beta-galactosidase5e-66253
NC_015732:30472:4620346203482302028Spirochaeta caldaria DSM 7334 chromosome, complete genomeBeta-galactosidase5e-65249
NC_014840:205723:2185502185502205862037Pantoea sp. At-9b plasmid pPAT9B03, complete sequenceBeta-galactosidase2e-56221
NC_016582:11820671:1185382311853823118559252103Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative beta-galactosidase2e-56221
NC_014639:227118:2360812360812380721992Bacillus atrophaeus 1942 chromosome, complete genomebeta-galacturonidase2e-55217
CP002207:227118:2360812360812380721992Bacillus atrophaeus 1942, complete genomebeta-galacturonidase2e-55217
UCMB5137:303641:3145793145793165701992Bacillus atrophaeus UCMB-5137beta-galacturonidase1e-54214
NC_012483:996555:99897999897910010782100Acidobacterium capsulatum ATCC 51196, complete genomebeta-galactosidase6e-54212
NC_017195:742298:7523147523147543081995Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completebeta-galactosidase family2e-52207
NC_014479:736102:7450677450677470611995Bacillus subtilis subsp. spizizenii str. W23 chromosome, completebeta-galacturonidase2e-51204
NC_000964:764118:7741367741367761271992Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein2e-51204
NC_014976:2981777:2992695299269529946861992Bacillus subtilis BSn5 chromosome, complete genomebeta-galacturonidase2e-51204
NC_019896:3281193:3287352328735232893431992Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completehypothetical protein3e-51203
NC_016047:876875:8877958877958897891995Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completebeta-galactosidase family protein4e-51203
NC_020244:783125:7920847920847940781995Bacillus subtilis XF-1, complete genomebeta-galacturonidase7e-51202
NC_004663:5437794:5452139545213954550992961Bacteroides thetaiotaomicron VPI-5482, complete genomebeta-galactosidase I2e-50201