Pre_GI: BLASTP Hits

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Query: NC_016582:1018014:1022284 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 1022284, End: 1022976, Length: 693

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014815:4621552:462968346296834630369687Micromonospora sp. L5 chromosome, complete genomehypothetical protein8e-53206
NC_021177:1418213:142138814213881422101714Streptomyces fulvissimus DSM 40593, complete genomeTwo-component system response regulator2e-31135
NC_013929:3206688:320857432085743209257684Streptomyces scabiei 87.22 chromosome, complete genometwo-component response regulator4e-28124
NC_012491:1293086:129725612972561298017762Brevibacillus brevis NBRC 100599, complete genometwo-component response regulator2e-23109
NC_009454:1389974:139536613953661396043678Pelotomaculum thermopropionicum SI, complete genomeresponse regulator2e-23109
NC_014618:1809369:181313818131381813857720Enterobacter cloacae SCF1 chromosome, complete genomefused response regulator receiver/hypothetical protein1e-22106
NC_011830:4951716:495288449528844953579696Desulfitobacterium hafniense DCB-2, complete genomeresponse regulator receiver and unknown domain protein2e-22105
NC_014551:442135:461643461643462314672Bacillus amyloliquefaciens DSM 7, complete genomeC4-dicarboxylate response regulator dctR1e-20100
NC_017188:419000:439045439045439716672Bacillus amyloliquefaciens TA208 chromosome, complete genomeC4-dicarboxylate response regulator dctR1e-20100
NC_017190:424000:443778443778444449672Bacillus amyloliquefaciens LL3 chromosome, complete genomeC4-dicarboxylate response regulator dctR1e-20100
NC_017191:425000:445075445075445746672Bacillus amyloliquefaciens XH7 chromosome, complete genometwo-component response regulator1e-20100
NC_008800:2695977:270028527002852701004720Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,DNA-binding transcriptional activator DcuR1e-20100
NC_015224:2701914:270701227070122707731720Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,DNA-binding transcriptional activator DcuR9e-21100
NC_015566:2039431:206318320631832063902720Serratia sp. AS12 chromosome, complete genomeresponse regulator receiver and unknown domain-containing protein2e-2099.4
NC_020211:2123819:214288721428872143606720Serratia marcescens WW4, complete genomeDNA-binding response regulator in two-component regulatory system with DcuS2e-2099
NC_020064:2728569:273017427301742730890717Serratia marcescens FGI94, complete genomeresponse regulator of citrate/malate metabolism9e-2097.1
NC_016641:2815974:283864628386462839404759Paenibacillus terrae HPL-003 chromosome, complete genometwo-component response regulator2e-1995.9
NC_012691:241404:241404241404242126723Tolumonas auensis DSM 9187, complete genomeresponse regulator receiver and unknown domain protein7e-1994
NC_012214:2221702:226519922651992265918720Erwinia pyrifoliae Ep1/96, complete genomeResponse regulator in two-component regulatory system with DcuS2e-1892.8
NC_013971:1660144:166394316639431664662720Erwinia amylovora ATCC 49946 chromosome, complete genometwo-component response regulator2e-1892.4
NC_013961:1622616:162641516264151627134720Erwinia amylovora, complete genomeTranscriptional regulatory protein citT2e-1892.4
NC_009848:775000:788461788461789162702Bacillus pumilus SAFR-032, complete genomeresponse regulator5e-1891.3
NC_009921:593665:605917605917606735819Frankia sp. EAN1pec, complete genomeresponse regulator receiver and unknown domain protein6e-1890.9
NC_008278:1472709:149396014939601494661702Frankia alni ACN14a, complete genomeC4-dicarboxylate two-component system response regulator8e-1890.5
CP002797:4411763:441539844153984416117720Escherichia coli NA114, complete genomeFumarate respiration transcriptional regulator DcuR9e-1890.5
NC_010694:2138000:217627121762712176990720Erwinia tasmaniensis, complete genomeResponse regulator in two-component regulatory system with DcuS9e-1890.5
NC_008554:4839116:484597148459714846666696Syntrophobacter fumaroxidans MPOB, complete genomeresponse regulator receiver and unknown domain protein1e-1790.1
NC_010067:3247169:324716932471693247888720Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-1788.6
NC_011147:4297513:429679742967974297516720Salmonella enterica subsp. enterica serovar Paratyphi A strDNA-binding transcriptional activator DcuR8e-1787
NC_011205:4564645:456392945639294564648720Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853DNA-binding transcriptional activator DcuR8e-1787
NC_011274:4385039:438432343843234385042720Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91DNA-binding transcriptional activator DcuR8e-1787
NC_016856:4563435:456271945627194563438720Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SDNA-binding transcriptional activator DcuR8e-1787
NC_021066:4906239:492568149256814926373693Raoultella ornithinolytica B6, complete genometwo-component system, CitB family, response regulator CitB1e-1687
NC_013757:3100515:310430431043043104990687Geodermatophilus obscurus DSM 43160, complete genomeresponse regulator receiver and unknown domain protein1e-1686.7
NC_004369:3082691:310357331035733104229657Corynebacterium efficiens YS-314, complete genomeputative transcription regulator2e-1685.9
NC_020260:263528:286276286276286974699Cronobacter sakazakii Sp291, complete genometranscriptional regulatory protein CitB3e-1685.5
NC_020272:3187482:319200931920093192689681Bacillus amyloliquefaciens IT-45, complete genomeTranscriptional regulatory protein citT8e-1684
NC_015663:1:104971049711189693Enterobacter aerogenes KCTC 2190 chromosome, complete genometwo-component system, CitB family, response regulator CitB4e-1581.6
NC_010498:1117938:113701511370151137740726Escherichia coli SMS-3-5, complete genomeresponse regulator9e-1580.5
NC_009495:280000:296345296345297019675Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeresponse regulator3e-1375.5
NC_009697:275919:289345289345290019675Clostridium botulinum A str. ATCC 19397 chromosome, completeresponse regulator3e-1375.5
NC_011283:4767269:477214847721484772852705Klebsiella pneumoniae 342 chromosome, complete genometranscriptional regulatory protein dpiA4e-1168.2
NC_013850:4612812:461769146176914618395705Klebsiella variicola At-22 chromosome, complete genomeresponse regulator receiver and unknown domain protein4e-1168.2
NC_008025:316302:358420358420359073654Deinococcus geothermalis DSM 11300, complete genomeresponse regulator receiver and unknown domain protein1e-1066.6