Pre_GI: BLASTP Hits

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Query: NC_016582:1018014:1020614 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 1020614, End: 1022287, Length: 1674

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014815:4621552:4630366463036646320511686Micromonospora sp. L5 chromosome, complete genomesignal transduction histidine kinase regulating citrate/malate metabolism5e-174611
NC_009454:1389974:1393694139369413953341641Pelotomaculum thermopropionicum SI, complete genomesignal transduction histidine kinase2e-48194
NC_013929:3206688:3206688320668832085771890Streptomyces scabiei 87.22 chromosome, complete genometwo-component sensor kinase5e-44179
NC_015224:2701914:2705343270534327070191677Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,sensory histidine kinase DcuS4e-43176
NC_008800:2695977:2698616269861627002921677Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,sensory histidine kinase DcuS8e-43175
NC_008554:4839116:4844310484431048459711662Syntrophobacter fumaroxidans MPOB, complete genomesignal transduction histidine kinase regulating citrate/malate metabolism1e-42174
NC_009697:275919:2877452877452893671623Clostridium botulinum A str. ATCC 19397 chromosome, completesensor histidine kinase9e-42171
NC_009495:280000:2947452947452963671623Clostridium botulinum A str. ATCC 3502 chromosome, complete genomesensor histidine kinase9e-42171
NC_014551:442135:4600464600464616681623Bacillus amyloliquefaciens DSM 7, complete genomesensor histidine kinase3e-41170
NC_017188:419000:4374484374484390701623Bacillus amyloliquefaciens TA208 chromosome, complete genomesensor histidine kinase6e-41169
NC_017190:424000:4421814421814438031623Bacillus amyloliquefaciens LL3 chromosome, complete genomesensor histidine kinase6e-41169
NC_017191:425000:4434784434784451001623Bacillus amyloliquefaciens XH7 chromosome, complete genometwo-component sensor histidine kinase6e-41169
NC_020211:2123819:2143599214359921452121614Serratia marcescens WW4, complete genomesensory histidine kinase DcuS1e-40168
NC_012691:241404:2397972397972414071611Tolumonas auensis DSM 9187, complete genomesignal transduction histidine kinase regulating citrate/malate metabolism3e-40167
NC_016856:4563435:4563435456343545650661632Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Ssensory histidine kinase DcuS3e-40166
CP002797:4411763:4416114441611444177451632Escherichia coli NA114, complete genomeFumarate respiration sensor kinase protein DcuS4e-40166
NC_012491:1293086:1295698129569812972691572Brevibacillus brevis NBRC 100599, complete genometwo-component sensor histidine kinase6e-40166
NC_011274:4385039:4385039438503943866701632Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91sensory histidine kinase DcuS7e-40165
NC_015566:2039431:2063907206390720655081602Serratia sp. AS12 chromosome, complete genomesignal transduction histidine kinase regulating citrate/malate metabolism7e-40165
NC_020272:3187482:3192686319268631942871602Bacillus amyloliquefaciens IT-45, complete genometwo-component system, CitB family, sensor histidine kinase CitS1e-39164
NC_011205:4564645:4564645456464545662761632Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853sensory histidine kinase DcuS2e-39164
NC_009848:775000:7868267868267884601635Bacillus pumilus SAFR-032, complete genomesensor histidine kinase1e-38161
NC_010694:2138000:2174634217463421762741641Erwinia tasmaniensis, complete genomeSensor protein3e-38160
NC_012214:2221702:2263562226356222652021641Erwinia pyrifoliae Ep1/96, complete genomeSensor protein8e-38158
NC_010067:3247169:3245583324558332471721590Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-37158
NC_013961:1622616:1627131162713116287711641Erwinia amylovora, complete genomeputative 2-component sensor protein5e-37156
NC_013971:1660144:1664659166465916662991641Erwinia amylovora ATCC 49946 chromosome, complete genometwo-component sensor kinase5e-37156
NC_015663:1:90059005105071503Enterobacter aerogenes KCTC 2190 chromosome, complete genometwo-component system, CitB family, cit operon sensor histidine kinase CitA3e-37156
NC_020064:2728569:2728569272856927301701602Serratia marcescens FGI94, complete genomesignal transduction histidine kinase regulating citrate/malate metabolism3e-37156
NC_016641:2815974:2837055283705528386531599Paenibacillus terrae HPL-003 chromosome, complete genomeprotein DctS22e-36154
NC_014618:1809369:1813854181385418154551602Enterobacter cloacae SCF1 chromosome, complete genomesignal transduction histidine kinase regulating citrate/malate metabolism7e-36152
NC_020260:263528:2869642869642885981635Cronobacter sakazakii Sp291, complete genomeSensor kinase CitA1e-34148
NC_021066:4906239:4926363492636349280061644Raoultella ornithinolytica B6, complete genomesignal transduction histidine kinase regulating citrate/malate metabolism1e-34148
NC_004369:3082691:3104226310422631058961671Corynebacterium efficiens YS-314, complete genomeputative sensor kinase1e-33145
NC_011830:4951716:4953625495362549552141590Desulfitobacterium hafniense DCB-2, complete genomesignal transduction histidine kinase regulating citrate/malate metabolism8e-31135
NC_008025:316302:3590703590703607041635Deinococcus geothermalis DSM 11300, complete genomesignal transduction histidine kinase regulating citrate/malate metabolism2e-28127
NC_011283:4767269:4770512477051247721551644Klebsiella pneumoniae 342 chromosome, complete genomesensor kinase CitA2e-25117
NC_013850:4612812:4615983461598346176981716Klebsiella variicola At-22 chromosome, complete genomesignal transduction histidine kinase regulating citrate/malate metabolism2e-25117
NC_016048:3063888:3104820310482031064271608Oscillibacter valericigenes Sjm18-20, complete genometwo-component histidine kinase3e-25117
NC_015957:115133:1151331151331177992667Streptomyces violaceusniger Tu 4113 chromosome, complete genomesignal transduction histidine kinase regulating citrate/malate metabolism2e-22107
NC_003155:921494:9359539359539387272775Streptomyces avermitilis MA-4680, complete genomemagnesium or manganese-dependent protein phosphatase8e-21102
NC_014152:2849991:286935528693552870203849Thermincola sp. JR, complete genomesignal transduction histidine kinase regulating citrate/malate metabolism2e-1067.8
NC_019978:875941:8916688916688929751308Halobacteroides halobius DSM 5150, complete genomehistidine kinase3e-1067.4
NC_007644:1603696:161339516133951614228834Moorella thermoacetica ATCC 39073, complete genomesignal transduction histidine kinase regulating citrate/malate metabolism8e-1065.9
NC_007298:2689731:2687932268793226897341803Dechloromonas aromatica RCB, complete genomeATP-binding region, ATPase-like:Histidine kinase A, N-terminal1e-0758.9
NC_014935:416609:4186694186694198981230Nitratifractor saLSUginis DSM 16511 chromosome, complete genomepas/pac sensor signal transduction histidine kinase1e-0758.5
NC_012803:1980955:1984872198487219860411170Micrococcus luteus NCTC 2665, complete genomesignal transduction histidine kinase3e-0757.4
NC_015320:160792:1695421695421708431302Archaeoglobus veneficus SNP6 chromosome, complete genomePAS/PAC sensor signal transduction histidine kinase3e-0757
NC_008321:3189974:3202429320242932048012373Shewanella sp. MR-4, complete genomeperiplasmic sensor signal transduction histidine kinase4e-0757
NC_013169:474856:4883334883334895021170Kytococcus sedentarius DSM 20547, complete genomesignal transduction histidine kinase4e-0757
NC_015320:160792:1662711662711683372067Archaeoglobus veneficus SNP6 chromosome, complete genomePAS/PAC sensor signal transduction histidine kinase4e-0756.6
NC_010511:6711836:6716700671670067182411542Methylobacterium sp. 4-46 chromosome, complete genomePAS/PAC sensor signal transduction histidine kinase1e-0655.5
NC_014355:1461355:1483607148360714850521446Candidatus Nitrospira defluvii, complete genomeputative sensor histidine kinase CusS1e-0655.1
NC_010524:4402478:4402478440247844046102133Leptothrix cholodnii SP-6, complete genomePAS/PAC sensor signal transduction histidine kinase2e-0654.7
NC_015675:4493758:4512888451288845184165529Mesorhizobium opportunistum WSM2075 chromosome, complete genomemulti-sensor signal transduction multi-kinase3e-0654.3
NC_014844:2828370:2848257284825728501791923Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomePAS sensor protein3e-0653.9
NC_013592:713036:7168837168837183551473Dickeya dadantii Ech586, complete genomeintegral membrane sensor signal transduction histidine kinase5e-0653.5
NC_016024:1974715:1994853199485319962981446Candidatus Chloracidobacterium thermophilum B chromosome chromosomesignal transduction histidine kinase6e-0653.1
NC_014335:5165211:5172017517201751738581842Bacillus cereus biovar anthracis str. CI chromosome, completesensory box histidine kinase YycG5e-0653.1
NC_012472:5239944:5245935524593552477761842Bacillus cereus 03BB102, complete genomesensory box histidine kinase YycG5e-0653.1
NC_016779:5189139:5199330519933052011711842Bacillus cereus F837/76 chromosome, complete genomeTwo-component sensor kinase SA14-24 like protein5e-0653.1
NC_019745:2346970:2356994235699423623545361Gloeocapsa sp. PCC 7428, complete genomemulti-sensor hybrid histidine kinase5e-0653.1
NC_017986:5421000:5437234543723454386371404Pseudomonas putida ND6 chromosome, complete genomeresponse regulator receiver sensor signal transduction histidine kinase6e-0652.8
NC_007644:1638083:165899816589981659825828Moorella thermoacetica ATCC 39073, complete genomesignal transduction histidine kinase regulating citrate/malate metabolism7e-0652.8
NC_009512:3118907:3117507311750731189101404Pseudomonas putida F1, complete genomeresponse regulator receiver sensor signal transduction histidine kinase8e-0652.4
NC_014221:3175013:3196514319651431976531140Truepera radiovictrix DSM 17093 chromosome, complete genomehistidine kinase8e-0652.4
NC_019745:2346970:2367232236723223697362505Gloeocapsa sp. PCC 7428, complete genomemulti-sensor hybrid histidine kinase9e-0652.4
NC_016584:4860360:4862193486219348639951803Desulfosporosinus orientis DSM 765 chromosome, complete genomesignal transduction histidine kinase9e-0652.4