Pre_GI: BLASTP Hits

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Query: NC_016582:10159486:10188200 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 10188200, End: 10189600, Length: 1401

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013929:1119384:1151179115117911525551377Streptomyces scabiei 87.22 chromosome, complete genomeglycosidase2e-108392
NC_013929:1119384:1147955114795511493821428Streptomyces scabiei 87.22 chromosome, complete genomeglycosidase6e-55215
NC_014623:4535544:4565761456576145677191959Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeesterase7e-27122
NC_016582:11820671:118249561182495611825951996Streptomyces bingchenggensis BCW-1 chromosome, complete genomeendo-1,4-beta-xylanase1e-23111
NC_013929:7278414:7310476731047673119241449Streptomyces scabiei 87.22 chromosome, complete genomearabinofuranosidase2e-23110
NC_013093:3068486:3100521310052131015671047Actinosynnema mirum DSM 43827, complete genomehypothetical protein2e-1790.5
NC_013729:380312:4030064030064042171212Kribbella flavida DSM 17836, complete genomealpha-L-arabinofuranosidase B1e-1585.1
NC_014623:464324:4740874740874762822196Stigmatella aurantiaca DW4/3-1 chromosome, complete genomealpha-L-arabinofuranosidase B family protein1e-1585.1
NC_014623:4788768:4800465480046548032332769Stigmatella aurantiaca DW4/3-1 chromosome, complete genomealpha-L-arabinofuranosidase B family protein2e-1584.3
NC_014817:332000:3335773335773373233747Asticcacaulis excentricus CB 48 chromosome 2, complete sequenceglycoside hydrolase family 433e-1583.6
NC_004663:4729452:473517747351774736148972Bacteroides thetaiotaomicron VPI-5482, complete genomearabinosidase3e-1273.6
NC_013929:1119384:1149506114950611510891584Streptomyces scabiei 87.22 chromosome, complete genomeglycosidase2e-1170.9
NC_004663:5437794:5452139545213954550992961Bacteroides thetaiotaomicron VPI-5482, complete genomebeta-galactosidase I2e-1170.5
NC_014655:2581968:258196825819682582879912Leadbetterella byssophila DSM 17132 chromosome, complete genomeglycoside hydrolase family 438e-0962.4
NC_014817:332000:3373343373343392381905Asticcacaulis excentricus CB 48 chromosome 2, complete sequenceglycoside hydrolase family 439e-0962
NC_004663:4729452:4736190473619047386252436Bacteroides thetaiotaomicron VPI-5482, complete genomeputative beta-xylosidase1e-0758.2
NC_014169:2353711:2377473237747323806643192Bifidobacterium longum subsp. longum JDM301 chromosome, completearabinosidase4e-0653.5
NC_009921:8549757:8560252856025285616191368Frankia sp. EAN1pec, complete genomealpha-L-arabinofuranosidase B6e-0652.8