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Query: NC_016582:10104458:10123529 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 10123529, End: 10123765, Length: 237

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015953:3258000:326457532645753264814240Streptomyces sp. SirexAA-E chromosome, complete genomehypothetical protein4e-1786.7
NC_010572:82000:932859328593518234Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative regulatory protein2e-1477.4
NC_014210:618500:637091637091637324234Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,protein of unknown function DUF3971e-1375.1
NC_017093:8518961:852422085242208524456237Actinoplanes missouriensis 431, complete genomehypothetical protein8e-1372.4
NC_014666:8198554:822251982225198222749231Frankia sp. EuI1c chromosome, complete genomeprotein of unknown function DUF3971e-1272
NC_008278:6885254:690709169070916907285195Frankia alni ACN14a, complete genomePutative regulator3e-1270.5
NC_018750:6950695:697089569708956971131237Streptomyces venezuelae ATCC 10712, complete genomeputative AbaA protein5e-1063.2
NC_013929:7663631:767086776708677671157291Streptomyces scabiei 87.22 chromosome, complete genomeAbaA-like protein2e-0858.2
NC_007777:461500:470346470346470555210Frankia sp. CcI3, complete genomeprotein of unknown function DUF3972e-0858.2
NC_016887:55000:709557095571167213Nocardia cyriacigeorgica GUH-2, complete genomehypothetical protein2e-0857.8
NC_006361:498305:507996507996508202207Nocardia farcinica IFM 10152, complete genomehypothetical protein2e-0857.8
NC_016887:511034:519978519978520184207Nocardia cyriacigeorgica GUH-2, complete genomehypothetical protein5e-0856.6
NC_013595:8553904:856210985621098562315207Streptosporangium roseum DSM 43021, complete genomehypothetical protein1e-0755.1
NC_016887:5988878:599565059956505995853204Nocardia cyriacigeorgica GUH-2, complete genomehypothetical protein2e-0754.3
NC_016887:4403872:441580044158004416006207Nocardia cyriacigeorgica GUH-2, complete genomehypothetical protein3e-0753.9
NC_016582:9459566:946850194685019468737237Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein9e-0648.9
NC_013131:4473410:447844144784414478635195Catenulispora acidiphila DSM 44928, complete genomeprotein of unknown function DUF3971e-0548.9