Pre_GI: BLASTP Hits

Some Help

Query: NC_016582:10104458:10122019 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 10122019, End: 10122486, Length: 468

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015953:3258000:326582932658293266608780Streptomyces sp. SirexAA-E chromosome, complete genomehypothetical protein9e-43172
NC_010572:82000:914239142392244822Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein2e-30131
NC_019673:7797666:780511078051107805910801Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein2e-1374.3
NC_008278:3169500:318525331852533186065813Frankia alni ACN14a, complete genomehypothetical protein5e-1373.2
NC_008278:667023:676844676844677689846Frankia alni ACN14a, complete genomehypothetical protein6e-1373.2
NC_019673:8348604:837050983705098371318810Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein4e-1270.5
NC_008278:925231:946456946456947346891Frankia alni ACN14a, complete genomehypothetical protein5e-1270.1
NC_018681:7624000:764584276458427646645804Nocardia brasiliensis ATCC 700358 chromosome, complete genomehypothetical protein2e-1168.2
NC_007777:461500:474669474669475115447Frankia sp. CcI3, complete genomeprotein of unknown function DUF5743e-1167.8
NC_009921:4399000:441989644198964420804909Frankia sp. EAN1pec, complete genomeprotein of unknown function DUF5746e-1166.6
NC_017093:8518961:852241585224158523227813Actinoplanes missouriensis 431, complete genomehypothetical protein6e-1166.6
NC_014666:1969602:197589419758941976367474Frankia sp. EuI1c chromosome, complete genome9e-1165.9
NC_009921:1813500:181966918196691820154486Frankia sp. EAN1pec, complete genomeprotein of unknown function DUF5741e-1065.1
NC_015953:6212366:624818862481886249003816Streptomyces sp. SirexAA-E chromosome, complete genomehypothetical protein4e-1063.5
NC_013929:7663631:767130376713037672052750Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein5e-1063.5
NC_007777:4796627:481698348169834817504522Frankia sp. CcI3, complete genomeprotein of unknown function DUF5744e-0960.5
NC_016887:3286436:330876433087643309504741Nocardia cyriacigeorgica GUH-2, complete genomehypothetical protein6e-0856.6
NC_014666:1117000:113445811344581135420963Frankia sp. EuI1c chromosome, complete genomeprotein of unknown function DUF5742e-0755.1
NC_007333:3360000:337447733744773375298822Thermobifida fusca YX, complete genomehypothetical protein3e-0754.3
NC_018681:5627940:564816756481675649003837Nocardia brasiliensis ATCC 700358 chromosome, complete genomehypothetical protein4e-0753.9
NC_008278:132000:142224142224143021798Frankia alni ACN14a, complete genomeconserved hypothetical protein; putative S-adenosyl-L-methionine-dependent methyltransferase domain2e-0651.6