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Query: NC_016582:10104458:10111950 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 10111950, End: 10112456, Length: 507

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009380:1885024:189212618921261892797672Salinispora tropica CNB-440 chromosome, complete genomecyclic nucleotide-binding protein1e-1582.4
NC_009380:3734773:375096037509603751652693Salinispora tropica CNB-440 chromosome, complete genomeCRP/FNR family transcriptional regulator2e-1478.2
NC_013510:5499447:550096255009625501648687Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, Crp/Fnr family2e-1375.1
NC_008278:1876435:189724418972441897918675Frankia alni ACN14a, complete genomeputative transcriptional regulator with cyclic nucleotide-binding domain (CrP/Fnr-family)2e-1375.1
NC_008711:3701635:370163537016353702312678Arthrobacter aurescens TC1, complete genomeputative cyclic nucleotide-binding domain3e-1374.3
NC_015957:10403997:104039971040399710404671675Streptomyces violaceusniger Tu 4113 chromosome, complete genomeCrp/Fnr family transcriptional regulator1e-1168.9
NC_011296:1821244:183697218369721837646675Thermodesulfovibrio yellowstonii DSM 11347, complete genomecatabolite gene activator2e-1065.5
NC_007759:2179000:219376221937622194511750Syntrophus aciditrophicus SB, complete genomecAMP-dependent transcriptional regulator4e-1064.3
NC_015588:2939747:294064829406482941325678Isoptericola variabilis 225 chromosome, complete genometranscriptional regulator, Crp/Fnr family7e-1063.2
NC_011901:2914000:293527629352762935872597Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completecAMP-regulatory protein1e-0962.4
NC_012982:1597697:160949416094941610198705Hirschia baltica ATCC 49814, complete genometranscriptional regulator, Crp/Fnr family2e-0961.6
NC_013530:3365742:336760333676033368280678Xylanimonas cellulosilytica DSM 15894, complete genometranscriptional regulator, Crp/Fnr family7e-0959.7
NC_020126:5470090:549252754925275493210684Myxococcus stipitatus DSM 14675, complete genomeCrp/Fnr family transcriptional regulator6e-0856.6
NC_007776:2731981:274077127407712741424654Synechococcus sp. JA-2-3B'a(2-13), complete genometranscriptional regulator, Crp/Fnr family8e-0856.6
NC_013947:1296877:130631313063131307020708Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, Crp/Fnr family9e-0856.2
NC_011899:1926000:193808619380861938745660Halothermothrix orenii H 168, complete genomeputative transcriptional regulator, Crp/Fnr family1e-0755.5
NC_012660:2431803:244516724451672445844678Pseudomonas fluorescens SBW25 chromosome, complete genomeputative regulatory protein3e-0754.7
NC_019673:7400817:740786074078607408573714Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator, Crp/Fnr family3e-0754.7
NC_014815:3790050:379748037974803798316837Micromonospora sp. L5 chromosome, complete genometranscriptional regulator, crp/fnr family5e-0753.9
NC_012913:2189862:218986221898622190506645Aggregatibacter aphrophilus NJ8700, complete genomecyclic nucleotide-binding domain protein6e-0753.5
NC_012917:4328463:433427643342764334908633Pectobacterium carotovorum subsp. carotovorum PC1, complete genometranscriptional regulator, Crp/Fnr family2e-0652