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Query: NC_016582:10015558:10022656 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 10022656, End: 10023807, Length: 1152

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004722:1008500:1012100101210010132961197Bacillus cereus ATCC 14579, complete genomeOxalate decarboxylase2e-143509
NC_011725:1032500:1036155103615510373511197Bacillus cereus B4264 chromosome, complete genomeoxalate decarboxylase OxdD4e-144511
NC_011772:1011220:1013890101389010150861197Bacillus cereus G9842, complete genomeoxalate decarboxylase OxdD1e-143509
NC_006582:883922:9069769069769081601185Bacillus clausii KSM-K16, complete genomeoxalate decarboxylase4e-145514
NC_006322:3418268:3420589342058934217431155Bacillus licheniformis ATCC 14580, complete genomeOxdC6e-144510
NC_006270:3418097:3420418342041834215721155Bacillus licheniformis ATCC 14580, complete genomeoxalate decarboxylase6e-144510
NC_014171:1018338:1021851102185110230471197Bacillus thuringiensis BMB171 chromosome, complete genomeoxalate decarboxylase1e-143509
NC_017208:1050414:1054881105488110560771197Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeoxalate decarboxylase4e-144511
NC_010505:1581429:1604399160439916056251227Methylobacterium radiotolerans JCM 2831, complete genomebicupin, oxalate decarboxylase family3e-136484
NC_011666:2335765:2354278235427823554321155Methylocella silvestris BL2, complete genomebicupin, oxalate decarboxylase family5e-119427
NC_014815:3272791:3272791327279132738911101Micromonospora sp. L5 chromosome, complete genomebicupin, oxalate decarboxylase family2e-128458
NC_014258:42262:4961749617508461230Pantoea vagans C9-1 plasmid pPag3, complete sequenceoxalate decarboxylase7e-128457
NC_012962:2639500:2639782263978226409451164Photorhabdus asymbiotica, complete genomehypothetical protein5e-77288
NC_014217:1352777:1358258135825813594541197Starkeya novella DSM 506 chromosome, complete genomebicupin, oxalate decarboxylase family1e-95350