Pre_GI: BLASTP Hits

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Query: NC_015848:3175692:3188240 Mycobacterium canettii CIPT 140010059, complete genome

Start: 3188240, End: 3188950, Length: 711

Host Lineage: Mycobacterium canettii; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: The Republic of Djibouti, Africa appears to be an exceptional place in terms of tuberculosis (TB) caused by Mycobacterium canettii, a highly unusual tubercle bacillus with unusual smooth colony morphology (STB) related to the M. tuberculosis complex (MTBC). M. canettii was first isolated from a 20-year-old French farmer suffering from pulmonary tuberculosis by G. Canetti in 1969. Since then, this strain has been isolated on rare occasions from patients who lived or were presumably infected in East Africa. It tends to preferentially affect children and foreigners in the Horn of Africa. M. canettii, a possible ancestor of the MTBC, is found almost exclusively in the Horn of Africa where TB is thought to have emerged about 40 000 years ago, coinciding with the expansion of human population out of Africa. The geographical restriction of M. canettii isolates and contrasting genetic diversity are characteristics compatible with a non-human reservoir. With the larger pan-genome reflecting the ancestral, wider gene pool of tubercle bacilli, their lower virulence and faster growth, especially at temperatures below 37 degrees C, plausibly reflecting broader environmental adaptability, STB strains might thus come nearer to the as-yet-unknown missing link between the obligate pathogen M. tuberculosis and environmental mycobacteria (adapted from PMIDs 20831613 and 23291586). Mycobacteria have an unusual outer membrane approximately 8nm thick, despite being considered Gram-positive. The outer membrane and the mycolic acid-arabinoglactan-peptidoglycan polymer form the cell wall, which constitutes an efficient permeability barrier in conjunction with the cell inner membrane.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_019950:3139865:315262331526233153333711Mycobacterium canettii CIPT 140060008 complete genomeConserved CRISPR-associated protein of unknown function Csm33e-128457
NC_000962:3116818:312825331282533128963711Mycobacterium tuberculosis H37Rv, complete genomehypothetical protein4e-116417
NC_002755:3110929:312245831224583123168711Mycobacterium tuberculosis CDC1551, complete genomeCRISPR-associated TM1792 family protein4e-116417
NC_009565:3128094:313988231398823140592711Mycobacterium tuberculosis F11, complete genomehypothetical protein4e-116417
NC_002945:3073370:308481530848153085525711Mycobacterium bovis AF2122/97, complete genomehypothetical protein4e-116417
NC_009525:3128786:314024431402443140954711Mycobacterium tuberculosis H37Ra, complete genomehypothetical protein4e-116417
NC_008769:3070266:308223030822303082940711Mycobacterium bovis BCG str. Pasteur 1173P2, complete genomehypothetical protein4e-116417
NC_012207:3063039:307500330750033075713711Mycobacterium bovis BCG str. Tokyo 172, complete genomehypothetical protein4e-116417
NC_012943:1279228:128487312848731285583711Mycobacterium tuberculosis KZN 1435 chromosome, complete genomecsm3 family CRISPR-associated ramp protein4e-116417
NC_016768:1279178:128481712848171285527711Mycobacterium tuberculosis KZN 4207 chromosome, complete genomehypothetical protein4e-116417
NC_016804:3049631:306159530615953062305711Mycobacterium bovis BCG str. Mexico chromosome, complete genomeCsm3 family CRISPR-associated ramp protein4e-116417
NC_017026:3110155:312209631220963122806711Mycobacterium tuberculosis RGTB327 chromosome, complete genomehypothetical protein4e-116417
NC_015873:1487127:149786714978671498550684Megasphaera elsdenii DSM 20460, complete genomeCRISPR-associated RAMP protein2e-35149
NC_009486:1103915:112344911234491124192744Thermotoga petrophila RKU-1 chromosome, complete genomeCRISPR-associated RAMP Csm3 family protein4e-29128
NC_013407:1205747:120989712098971210778882Methanocaldococcus vulcanius M7, complete genomeCRISPR-associated RAMP protein, Csm3 family1e-28126
NC_006300:1624254:164164416416441642339696Mannheimia succiniciproducens MBEL55E, complete genomehypothetical protein7e-28124
NC_014212:670996:691237691237691914678Meiothermus silvanus DSM 9946 chromosome, complete genomeCRISPR-associated RAMP protein, Csm3 family1e-26119
NC_011529:806000:823745823745824617873Thermococcus onnurineus NA1, complete genomehypothetical protein2e-26119
NC_000916:983500:995646995646996383738Methanothermobacter thermautotrophicus str. Delta H, completehypothetical protein1e-25116
NC_013501:1881692:189579918957991896593795Rhodothermus marinus DSM 4252, complete genomeCRISPR-associated RAMP protein, Csm3 family5e-25114
NC_011060:2525367:253634325363432537200858Pelodictyon phaeoclathratiforme BU-1, complete genomeCRISPR-associated RAMP protein, Csm3 family1e-24113
NC_009718:1470972:150066315006631501391729Fervidobacterium nodosum Rt17-B1, complete genomeCRISPR-associated RAMP Csm3 family protein7e-24110
NC_000961:135493:142867142867143742876Pyrococcus horikoshii OT3, complete genomehypothetical protein1e-23110
NC_016940:190986:202945202945203691747Saprospira grandis str. Lewin chromosome, complete genomeCRISPR-associated RAMP Csm3 family protein2e-23109
NC_008639:2358592:237017723701772371034858Chlorobium phaeobacteroides DSM 266, complete genomeCRISPR-associated RAMP protein, Csm3 family2e-23109
NC_015565:624298:627283627283627936654Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeCRISPR-associated RAMP protein, Csm3 family3e-23108
NC_016610:2489415:250240925024092503047639Tannerella forsythia ATCC 43037 chromosome, complete genomeCsm3 family CRISPR-associated RAMP protein5e-23107
NC_014926:819163:828561828561829271711Thermovibrio ammonificans HB-1 chromosome, complete genomeCRISPR-associated RAMP protein, Csm3 family5e-21101
NC_008554:1664131:167147716714771672202726Syntrophobacter fumaroxidans MPOB, complete genomeCRISPR-associated RAMP protein, Csm3 family4e-2098.2
NC_013926:974668:986479986479987297819Aciduliprofundum boonei T469 chromosome, complete genomeCRISPR-associated RAMP protein, Csm3 family3e-1995.5
NC_014377:532816:536208536208537026819Thermosediminibacter oceani DSM 16646 chromosome, complete genomeCRISPR-associated protein, Csm3 family4e-1994.7
NC_002689:78297:114661114661115350690Thermoplasma volcanium GSS1, complete genomehypothetical protein8e-1994
NC_014836:1108919:111814911181491118886738Desulfurispirillum indicum S5 chromosome, complete genomeCsm3 family CRISPR-associated RAMP protein4e-1891.7
NC_015388:1913118:192196319219631922811849Desulfobacca acetoxidans DSM 11109 chromosome, complete genomeCRISPR-associated RAMP protein, Csm3 family7e-1787.4
NC_010525:1041493:104058210405821041505924Thermoproteus neutrophilus V24Sta, complete genomeCRISPR-associated RAMP protein, Csm3 family8e-1373.9
NC_015562:1230532:1253761125376112547891029Methanotorris igneus Kol 5 chromosome, complete genomeCRISPR-associated RAMP protein, Csm3 family6e-1167.8
NC_015151:1427965:147697814769781477955978Vulcanisaeta moutnovskia 768-28 chromosome, complete genomeCRISPR-associated RAMP protein, Csm3 family4e-1065.1
NC_010803:1009000:1018684101868410199551272Chlorobium limicola DSM 245, complete genomeprotein of unknown function DUF3242e-0653.1