Pre_GI: BLASTP Hits

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Query: NC_015848:2684275:2698286 Mycobacterium canettii CIPT 140010059, complete genome

Start: 2698286, End: 2699677, Length: 1392

Host Lineage: Mycobacterium canettii; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: The Republic of Djibouti, Africa appears to be an exceptional place in terms of tuberculosis (TB) caused by Mycobacterium canettii, a highly unusual tubercle bacillus with unusual smooth colony morphology (STB) related to the M. tuberculosis complex (MTBC). M. canettii was first isolated from a 20-year-old French farmer suffering from pulmonary tuberculosis by G. Canetti in 1969. Since then, this strain has been isolated on rare occasions from patients who lived or were presumably infected in East Africa. It tends to preferentially affect children and foreigners in the Horn of Africa. M. canettii, a possible ancestor of the MTBC, is found almost exclusively in the Horn of Africa where TB is thought to have emerged about 40 000 years ago, coinciding with the expansion of human population out of Africa. The geographical restriction of M. canettii isolates and contrasting genetic diversity are characteristics compatible with a non-human reservoir. With the larger pan-genome reflecting the ancestral, wider gene pool of tubercle bacilli, their lower virulence and faster growth, especially at temperatures below 37 degrees C, plausibly reflecting broader environmental adaptability, STB strains might thus come nearer to the as-yet-unknown missing link between the obligate pathogen M. tuberculosis and environmental mycobacteria (adapted from PMIDs 20831613 and 23291586). Mycobacteria have an unusual outer membrane approximately 8nm thick, despite being considered Gram-positive. The outer membrane and the mycolic acid-arabinoglactan-peptidoglycan polymer form the cell wall, which constitutes an efficient permeability barrier in conjunction with the cell inner membrane.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016768:1769332:1772526177252617739171392Mycobacterium tuberculosis KZN 4207 chromosome, complete genomeglycyl-tRNA synthetase glyS0928
NC_012943:1769445:1772639177263917740301392Mycobacterium tuberculosis KZN 1435 chromosome, complete genomeglycyl-tRNA synthetase0928
NC_009525:2635792:2651641265164126530321392Mycobacterium tuberculosis H37Ra, complete genomeglycyl-tRNA synthetase0928
NC_010612:4501414:4515981451598145173721392Mycobacterium marinum M, complete genomeglycyl-tRNA synthetase GlyS0859
NC_016887:1680338:1698409169840916997941386Nocardia cyriacigeorgica GUH-2, complete genomeglycyl-tRNA synthetase (Glycine--tRNA ligase) (GlyRS)0724
NC_005823:2840000:2844717284471728461111395Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130glycyl-tRNA synthetase1e-128460
NC_015519:686027:6994656994657008471383Tepidanaerobacter sp. Re1 chromosome, complete genomeglycyl-tRNA synthetase1e-128459
NC_011999:1320159:1320159132015913215471389Macrococcus caseolyticus JCSC5402, complete genomeglycyl-tRNA synthetase4e-128458
NC_020291:117983:1446091446091460001392Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeglycine--tRNA ligase4e-128458
NC_008262:2649289:2683159268315926845621404Clostridium perfringens SM101, complete genomeglycyl-tRNA synthetase2e-127456
NC_014328:4471995:4488456448845644898471392Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeglycyl-tRNA synthetase2e-126452
NC_012658:3827500:3849719384971938511101392Clostridium botulinum Ba4 str. 657 chromosome, complete genomeglycyl-tRNA synthetase1e-125450
NC_021182:4602683:4619327461932746207181392Clostridium pasteurianum BC1, complete genomeglycyl-tRNA synthetase, dimeric type1e-125450
NC_010516:3807780:3830028383002838314191392Clostridium botulinum B1 str. Okra, complete genomeglycyl-tRNA synthetase3e-125449
NC_010723:173280:1978021978021991931392Clostridium botulinum E3 str. Alaska E43, complete genomeglycyl-tRNA synthetase3e-125449
NC_009706:165913:1679651679651693561392Clostridium kluyveri DSM 555 chromosome, complete genomeglycyl-tRNA synthetase2e-125449
NC_011837:165913:1679651679651693561392Clostridium kluyveri NBRC 12016, complete genomeglycyl-tRNA synthetase2e-125449
NC_014393:4541000:4555969455596945573601392Clostridium cellulovorans 743B chromosome, complete genomeglycyl-tRNA synthetase2e-125449
NC_009495:3735703:3759022375902237604131392Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeglycyl-tRNA synthetase2e-125449
NC_009697:3711692:3735011373501137364021392Clostridium botulinum A str. ATCC 19397 chromosome, completeglycyl-tRNA synthetase2e-125449
NC_009698:3609881:3632121363212136335121392Clostridium botulinum A str. Hall chromosome, complete genomeglycyl-tRNA synthetase2e-125449
NC_010674:192951:1959821959821973731392Clostridium botulinum B str. Eklund 17B, complete genomeglycyl-tRNA synthetase2e-125449
NC_009699:3839575:3861809386180938632001392Clostridium botulinum F str. Langeland chromosome, complete genomeglycyl-tRNA synthetase2e-125449
NC_017297:3838189:3860431386043138618221392Clostridium botulinum F str. 230613 chromosome, complete genomeglycine--tRNA ligase2e-125449
NC_014171:4740500:4740764474076447421401377Bacillus thuringiensis BMB171 chromosome, complete genomehypothetical protein1e-124447
NC_012563:4004709:4026946402694640283371392Clostridium botulinum A2 str. Kyoto, complete genomeglycine--tRNA ligase7e-125447
NC_015687:3326461:3341653334165333430411389Clostridium acetobutylicum DSM 1731 chromosome, complete genomeglycyl-tRNA synthetase6e-125447
NC_003030:3324834:3340027334002733414151389Clostridium acetobutylicum ATCC 824, complete genomeglycyl-tRNA synthetase6e-125447
NC_008593:153014:1665351665351679261392Clostridium novyi NT, complete genomeglycyl-tRNA synthetase5e-125447
NC_008600:4687500:4689179468917946905551377Bacillus thuringiensis str. Al Hakam, complete genomeglycine--tRNA ligase2e-124446
NC_005945:4670978:4674018467401846753941377Bacillus anthracis str. Sterne, complete genomeglycyl-tRNA synthetase2e-124446
NC_012472:4691251:4692898469289846942741377Bacillus cereus 03BB102, complete genomeglycyl-tRNA synthetase2e-124446
NC_006274:4742489:4744135474413547455111377Bacillus cereus E33L, complete genomeglycyl-tRNA synthetase2e-124446
NC_011658:4672000:4673665467366546750411377Bacillus cereus AH187 chromosome, complete genomeglycyl-tRNA synthetase2e-124446
NC_011773:4732457:4734104473410447354801377Bacillus cereus AH820 chromosome, complete genomeglycyl-tRNA synthetase2e-124446
NC_011969:4613430:4615076461507646164521377Bacillus cereus Q1 chromosome, complete genomeglycyl-tRNA synthetase2e-124446
NC_016779:4645155:4646802464680246481781377Bacillus cereus F837/76 chromosome, complete genomeGlycyl-tRNA synthetase2e-124446
NC_017200:4697500:4698670469867047000461377Bacillus thuringiensis serovar finitimus YBT-020 chromosome,glycyl-tRNA synthetase2e-124446
NC_004557:162670:1725081725081738991392Clostridium tetani E88, complete genomeglycyl-tRNA synthetase2e-124446
NC_014335:4622500:4624154462415446255301377Bacillus cereus biovar anthracis str. CI chromosome, completeglycyl-tRNA synthetase1e-124446
NC_009012:1595498:1595498159549815968861389Clostridium thermocellum ATCC 27405, complete genomeglycyl-tRNA synthetase8e-124444
NC_015425:163000:1766081766081779991392Clostridium botulinum BKT015925 chromosome, complete genomeglycyl-tRNA synthetase5e-124444
NC_020134:2193900:2198808219880822001991392Clostridium stercorarium subsp. stercorarium DSM 8532, completeglycine--tRNA ligase2e-123442
NC_009633:3055413:3055413305541330568011389Alkaliphilus metalliredigens QYMF chromosome, complete genomeglycyl-tRNA synthetase5e-121434
NC_016630:1610723:1624472162447216258631392Filifactor alocis ATCC 35896 chromosome, complete genomeglycine--tRNA ligase4e-120431
NC_016894:2931213:2948969294896929503631395Acetobacterium woodii DSM 1030 chromosome, complete genomeglycyl-tRNA synthetase GlyS1e-119430
NC_015966:2841420:2851976285197628534211446Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomeglycyl-tRNA synthetase6e-117421
NC_015732:982774:9877119877119891021392Spirochaeta caldaria DSM 7334 chromosome, complete genomeglycyl-tRNA synthetase6e-117421
NC_014974:758129:7581297581297596491521Thermus scotoductus SA-01 chromosome, complete genomeglycyl-tRNA synthetase6e-114411
NC_015578:3561838:3576708357670835780961389Treponema primitia ZAS-2 chromosome, complete genomeglycine--tRNA ligase7e-113407
NC_011728:376375:3798913798913812281338Borrelia burgdorferi ZS7, complete genomeglycyl-tRNA synthetase2e-112406
NC_001318:377039:3805553805553818921338Borrelia burgdorferi B31, complete genomeglycyl-tRNA synthetase1e-112406
NC_020125:194691:2173112173112188521542Riemerella anatipestifer RA-CH-2, complete genomeGlycyl-tRNA synthetase (class II)6e-104378
NC_014738:1507641:1510021151002115115621542Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome,glycyl-tRNA synthetase1e-103377
NC_014933:510164:5365475365475380881542Bacteroides helcogenes P 36-108 chromosome, complete genomeglycyl-tRNA synthetase2e-100366
NC_015164:2111426:2113444211344421149881545Bacteroides salanitronis DSM 18170 chromosome, complete genomeglycyl-tRNA synthetase5e-99362
NC_019960:1198067:1226695122669512282631569Prevotella dentalis DSM 3688 chromosome 1, complete sequenceglycyl-tRNA synthetase, dimeric type6e-97354
NC_008698:235688:2557702557702572631494Thermofilum pendens Hrk 5, complete genomeglycyl-tRNA synthetase3e-96352
NC_012806:105133:1153791153791167401362Mycoplasma conjunctivae, complete genomeGlycyl-tRNA synthetase5e-92338
NC_014448:487381:5074965074965088721377Mycoplasma hyorhinis HUB-1 chromosome, complete genomeGlycyl tRNA synthetase3e-89329
NC_011025:313897:3138973138973152881392Mycoplasma arthritidis 158L3-1, complete genomeglycyl-tRNA synthetase7e-88324
NC_011565:190406:1904061904061919531548Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2,glycyl-tRNA synthetase2e-86319
NC_005213:295994:3627823627823643201539Nanoarchaeum equitans Kin4-M, complete genomeglycyl-tRNA synthetase2e-68260
NC_005213:202400:3627823627823643201539Nanoarchaeum equitans Kin4-M, complete genomeglycyl-tRNA synthetase2e-68260
NC_015562:1081826:1097302109730210990291728Methanotorris igneus Kol 5 chromosome, complete genomeglycyl-tRNA synthetase2e-45183
NC_014122:143446:1640811640811657931713Methanocaldococcus infernus ME chromosome, complete genomeglycyl-tRNA synthetase8e-45181
NC_013407:1610221:1626805162680516285321728Methanocaldococcus vulcanius M7, complete genomeglycyl-tRNA synthetase2e-43177
NC_016051:1005188:1021604102160410233131710Thermococcus sp. AM4 chromosome, complete genomeglycyl-tRNA synthetase1e-43177
NC_013156:431795:4317954317954335281734Methanocaldococcus fervens AG86, complete genomeglycyl-tRNA synthetase5e-43175
NC_000909:201000:2191042191042208371734Methanocaldococcus jannaschii DSM 2661, complete genomeglycyl-tRNA synthetase5e-43175
NC_016070:1380500:1400398140039814021581761Thermoproteus tenax Kra 1, complete genomeglycyl-tRNA synthetase6e-41169
NC_015315:1684925:1684925168492516866911767Thermoproteus uzoniensis 768-20 chromosome, complete genomeglycyl-tRNA synthetase7e-40165
NC_009376:1633283:1633283163328316350401758Pyrobaculum arsenaticum DSM 13514 chromosome, complete genomeglycyl-tRNA synthetase9e-40164
NC_012588:742000:7426567426567441101455Sulfolobus islandicus M.14.25 chromosome, complete genomeglycyl-tRNA synthetase3e-39163
NC_012622:1579927:1601503160150316032271725Sulfolobus islandicus Y.G.57.14 chromosome, complete genomeglycyl-tRNA synthetase1e-37157
NC_015320:160792:1721471721471738531707Archaeoglobus veneficus SNP6 chromosome, complete genomeglycyl-tRNA synthetase1e-36154
NC_014471:1269571:1291314129131412930711758Ignisphaera aggregans DSM 17230 chromosome, complete genomeglycyl-tRNA synthetase2e-34147