Pre_GI: BLASTP Hits

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Query: NC_015848:1708176:1717095 Mycobacterium canettii CIPT 140010059, complete genome

Start: 1717095, End: 1717994, Length: 900

Host Lineage: Mycobacterium canettii; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: The Republic of Djibouti, Africa appears to be an exceptional place in terms of tuberculosis (TB) caused by Mycobacterium canettii, a highly unusual tubercle bacillus with unusual smooth colony morphology (STB) related to the M. tuberculosis complex (MTBC). M. canettii was first isolated from a 20-year-old French farmer suffering from pulmonary tuberculosis by G. Canetti in 1969. Since then, this strain has been isolated on rare occasions from patients who lived or were presumably infected in East Africa. It tends to preferentially affect children and foreigners in the Horn of Africa. M. canettii, a possible ancestor of the MTBC, is found almost exclusively in the Horn of Africa where TB is thought to have emerged about 40 000 years ago, coinciding with the expansion of human population out of Africa. The geographical restriction of M. canettii isolates and contrasting genetic diversity are characteristics compatible with a non-human reservoir. With the larger pan-genome reflecting the ancestral, wider gene pool of tubercle bacilli, their lower virulence and faster growth, especially at temperatures below 37 degrees C, plausibly reflecting broader environmental adaptability, STB strains might thus come nearer to the as-yet-unknown missing link between the obligate pathogen M. tuberculosis and environmental mycobacteria (adapted from PMIDs 20831613 and 23291586). Mycobacteria have an unusual outer membrane approximately 8nm thick, despite being considered Gram-positive. The outer membrane and the mycolic acid-arabinoglactan-peptidoglycan polymer form the cell wall, which constitutes an efficient permeability barrier in conjunction with the cell inner membrane.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017026:1686500:169394016939401694839900Mycobacterium tuberculosis RGTB327 chromosome, complete genomehypothetical protein8e-174609
NC_012207:1681971:169089016908901691789900Mycobacterium bovis BCG str. Tokyo 172, complete genomehypothetical protein8e-174609
NC_009565:1688642:169756116975611698460900Mycobacterium tuberculosis F11, complete genomehypothetical protein8e-174609
NC_002755:1684161:169308016930801693979900Mycobacterium tuberculosis CDC1551, complete genomehypothetical protein8e-174609
NC_008769:1709078:171799717179971718896900Mycobacterium bovis BCG str. Pasteur 1173P2, complete genomehypothetical protein8e-174609
NC_012943:2707677:271964327196432720542900Mycobacterium tuberculosis KZN 1435 chromosome, complete genomehypothetical protein8e-174609
NC_016768:2704350:271631627163162717215900Mycobacterium tuberculosis KZN 4207 chromosome, complete genomehypothetical protein8e-174609
NC_016804:1679357:168827616882761689175900Mycobacterium bovis BCG str. Mexico chromosome, complete genomehypothetical protein8e-174609
NC_000962:1684005:169292416929241693823900Mycobacterium tuberculosis H37Rv, complete genomehypothetical protein1e-172605
NC_009525:1685522:169444116944411695340900Mycobacterium tuberculosis H37Ra, complete genomehypothetical protein1e-172605
NC_019950:1689910:169626616962661697165900Mycobacterium canettii CIPT 140060008 complete genomehypothetical protein2e-172605
NC_010612:2777687:278635927863592787267909Mycobacterium marinum M, complete genomehypothetical protein7e-128456
NC_002945:1680751:168999916899991690568570Mycobacterium bovis AF2122/97, complete genomehypothetical protein1e-108393
NC_008702:2942246:295333429533342954254921Azoarcus sp. BH72, complete genomeconserved hypothetical protein2e-66252
NC_009719:3532587:355213335521333553074942Parvibaculum lavamentivorans DS-1 chromosome, complete genomehypothetical protein1e-63243
NC_008380:855246:866143866143867084942Rhizobium leguminosarum bv. viciae 3841, complete genomehypothetical protein3e-57221
NC_007651:3656433:366194336619433662902960Burkholderia thailandensis E264 chromosome I, complete sequencehypothetical protein2e-55216
NC_002945:1680751:168967016896701690020351Mycobacterium bovis AF2122/97, complete genomehypothetical protein3e-55215
NC_012883:1817358:183728718372871838213927Thermococcus sibiricus MM 739, complete genomehypothetical protein1e-40167
NC_004547:1970686:198247719824771983436960Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein5e-38158
NC_012917:2921932:293288229328822933841960Pectobacterium carotovorum subsp. carotovorum PC1, complete genomehypothetical protein6e-38157
NC_012917:2921932:293191429319142932882969Pectobacterium carotovorum subsp. carotovorum PC1, complete genomehypothetical protein3e-33142
NC_010622:2576110:258748225874822588405924Burkholderia phymatum STM815 chromosome 1, complete sequencehypothetical protein8e-32137
NC_004547:1970686:198343619834361984404969Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein8e-31134
NC_014539:860402:867089867089868015927Burkholderia sp. CCGE1003 chromosome 1, complete sequencehypothetical protein5e-28125