Pre_GI: BLASTP Hits

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Query: NC_015848:1647523:1662481 Mycobacterium canettii CIPT 140010059, complete genome

Start: 1662481, End: 1663746, Length: 1266

Host Lineage: Mycobacterium canettii; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: The Republic of Djibouti, Africa appears to be an exceptional place in terms of tuberculosis (TB) caused by Mycobacterium canettii, a highly unusual tubercle bacillus with unusual smooth colony morphology (STB) related to the M. tuberculosis complex (MTBC). M. canettii was first isolated from a 20-year-old French farmer suffering from pulmonary tuberculosis by G. Canetti in 1969. Since then, this strain has been isolated on rare occasions from patients who lived or were presumably infected in East Africa. It tends to preferentially affect children and foreigners in the Horn of Africa. M. canettii, a possible ancestor of the MTBC, is found almost exclusively in the Horn of Africa where TB is thought to have emerged about 40 000 years ago, coinciding with the expansion of human population out of Africa. The geographical restriction of M. canettii isolates and contrasting genetic diversity are characteristics compatible with a non-human reservoir. With the larger pan-genome reflecting the ancestral, wider gene pool of tubercle bacilli, their lower virulence and faster growth, especially at temperatures below 37 degrees C, plausibly reflecting broader environmental adaptability, STB strains might thus come nearer to the as-yet-unknown missing link between the obligate pathogen M. tuberculosis and environmental mycobacteria (adapted from PMIDs 20831613 and 23291586). Mycobacteria have an unusual outer membrane approximately 8nm thick, despite being considered Gram-positive. The outer membrane and the mycolic acid-arabinoglactan-peptidoglycan polymer form the cell wall, which constitutes an efficient permeability barrier in conjunction with the cell inner membrane.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016768:2764000:2770546277054627718441299Mycobacterium tuberculosis KZN 4207 chromosome, complete genometranscriptional activator0847
NC_009565:1629780:1642932164293216442301299Mycobacterium tuberculosis F11, complete genomehypothetical transcriptional activator protein0847
NC_002945:1621765:1635127163512716363921266Mycobacterium bovis AF2122/97, complete genometranscriptional activator protein0846
NC_011770:3396637:3396637339663733978361200Pseudomonas aeruginosa LESB58, complete genomehypothetical protein2e-68259
NC_014414:167803:1678031678031690141212Parvularcula bermudensis HTCC2503 chromosome, complete genomehypothetical protein3e-53209
NC_008268:3233961:3255809325580932570531245Rhodococcus sp. RHA1, complete genomehypothetical protein6e-25115
NC_013929:1611940:1632189163218916334301242Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein1e-22107
NC_013159:2832552:2835826283582628371511326Saccharomonospora viridis DSM 43017, complete genomeregulator of polyketide synthase expression6e-1789
NC_018681:7624000:7640808764080876418781071Nocardia brasiliensis ATCC 700358 chromosome, complete genomeFis family transcriptional regulator7e-1788.6
NC_009338:4913510:4919772491977249210641293Mycobacterium gilvum PYR-GCK chromosome, complete genomehypothetical protein7e-1065.5
NC_021184:3912805:3930546393054639328402295Desulfotomaculum gibsoniae DSM 7213, complete genomehypothetical protein9e-0755.1
NC_011184:2421687:2421687242168724228321146Vibrio fischeri MJ11 chromosome I, complete sequencecarbohydrate diacid regulator3e-0653.5