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Query: NC_015761:4355335:4371755 Salmonella bongori NCTC 12419, complete genome

Start: 4371755, End: 4372666, Length: 912

Host Lineage: Salmonella bongori; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Salmonella bongori is the second species of Salmonella after Salmonella enterica and is considered a distant outgroup. This species is reptile-specific, is rarely found in human infections and it lacks SPI-2. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010102:4745949:476399447639944764905912Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-135481
NC_011205:4718239:474334147433414744252912Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein4e-135480
NC_011080:4703266:472785447278544728765912Salmonella enterica subsp. enterica serovar Newport str. SL254,putative cytoplasmic protein4e-135480
NC_011147:4460726:449496244949624495873912Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein7e-135479
NC_011294:4560902:458601445860144586925912Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein1e-134479
NC_006905:4638707:466613246661324667043912Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein2e-134478
NC_004631:4687270:470537547053754706286912Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein4e-134477
NC_012125:4716000:474344747434474744358912Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein9e-134476
NC_011747:115864:119318119318120259942Escherichia coli S88 plasmid pECOS88, complete sequencehypothetical protein5e-1788.6
NC_009837:127000:133063133063134004942Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequencehypothetical protein5e-1788.6
NC_010334:2615260:263425226342522635220969Shewanella halifaxensis HAW-EB4, complete genomehypothetical protein5e-1685.5