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Query: NC_015761:299386:346468 Salmonella bongori NCTC 12419, complete genome

Start: 346468, End: 346950, Length: 483

Host Lineage: Salmonella bongori; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Salmonella bongori is the second species of Salmonella after Salmonella enterica and is considered a distant outgroup. This species is reptile-specific, is rarely found in human infections and it lacks SPI-2. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013941:4470932:450127145012714501684414Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein5e-22103
NC_013008:4643825:467291246729124673325414Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeLEE-encoded positive regulator of transcription5e-22103
NC_002655:4653160:468275046827504683163414Escherichia coli O157:H7 EDL933, complete genomehypothetical protein5e-22103
NC_002695:4584177:461376746137674614180414Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein5e-22103
NC_011601:4096427:412753241275324127945414Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomepositive regulator GrlA2e-21101
NC_013364:3701895:374517337451733745586414Escherichia coli O111:H- str. 11128, complete genomepositive regulator GrlA2e-21101
NC_013353:3669500:370367337036733704086414Escherichia coli O103:H2 str. 12009, complete genomepositive regulator GrlA5e-21100
AP010958:3669500:370367337036733704086414Escherichia coli O103:H2 str. 12009 DNA, complete genomepositive regulator GrlA5e-21100
NC_013361:5319497:533979453397945340207414Escherichia coli O26:H11 str. 11368 chromosome, complete genomepositive regulator GrlA5e-21100
NC_003198:3042000:304294330429433043455513Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein1e-1788.6
NC_014618:4114004:414414141441414144617477Enterobacter cloacae SCF1 chromosome, complete genometranscriptional regulator CaiF3e-1787.4