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Query: NC_015761:299386:306683 Salmonella bongori NCTC 12419, complete genome

Start: 306683, End: 306919, Length: 237

Host Lineage: Salmonella bongori; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Salmonella bongori is the second species of Salmonella after Salmonella enterica and is considered a distant outgroup. This species is reptile-specific, is rarely found in human infections and it lacks SPI-2. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012912:1053618:107040710704071070643237Dickeya zeae Ech1591, complete genomephage transcriptional regulator, AlpA7e-31132
NC_014618:690056:701162701162701398237Enterobacter cloacae SCF1 chromosome, complete genomeprophage CP4-57 regulatory8e-28122
NC_011745:291422:300366300366300614249Escherichia coli ED1a chromosome, complete genomeputative AlpA-family regulatory protein from prophage2e-1994.7
NC_007954:334795:354155354155354451297Shewanella denitrificans OS217, complete genomeProphage CP4-57 regulatory1e-1375.1
NC_008577:4533574:454150445415044541731228Shewanella sp. ANA-3 chromosome 1, complete sequencehypothetical protein9e-1062.4
AP010958:1305712:132750913275091327829321Escherichia coli O103:H2 str. 12009 DNA, complete genomeputative DNA binding protein6e-0959.7
NC_013353:1305712:132750913275091327829321Escherichia coli O103:H2 str. 12009, complete genomeDNA binding protein6e-0959.7
NC_008322:373531:387382387382387627246Shewanella sp. MR-7, complete genomephage transcriptional regulator, AlpA1e-0858.2
NC_013008:1513000:153756115375611537749189Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeDNA binding protein2e-0857.8
NC_002695:1571389:159634515963451596533189Escherichia coli O157:H7 str. Sakai, complete genomeputative DNA binding protein2e-0857.8
NC_011750:527470:535070535070535306237Escherichia coli IAI39 chromosome, complete genomeputative DNA binding protein from phage origin7e-0752.8
NC_017047:1906000:190691119069111907213303Rahnella aquatilis HX2 chromosome, complete genomeDNA binding protein1e-0652