Pre_GI: BLASTP Hits

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Query: NC_015761:1017301:1019857 Salmonella bongori NCTC 12419, complete genome

Start: 1019857, End: 1020528, Length: 672

Host Lineage: Salmonella bongori; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Salmonella bongori is the second species of Salmonella after Salmonella enterica and is considered a distant outgroup. This species is reptile-specific, is rarely found in human infections and it lacks SPI-2. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017046:2756000:275996727599672760644678Salmonella enterica subsp. enterica serovar Typhimurium str. 798antitermination protein2e-112405
NC_016856:2812905:281443628144362815113678Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Santiterminator-like protein2e-112405
NC_011080:2761403:276293427629342763611678Salmonella enterica subsp. enterica serovar Newport str. SL254,gifsy-1 prophage RegQ2e-112405
NC_009792:1770106:177570317757031776386684Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein2e-94344
NC_016831:1734292:174490917449091745598690Salmonella enterica subsp. enterica serovar Gallinarum/pullorumphage antitermination protein Q3e-89327
NC_011294:1220526:123215012321501232839690Salmonella enterica subsp. enterica serovar Enteritidis strphage antitermination protein Q3e-89327
NC_011205:1345511:136806213680621368709648Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853gifsy-1 prophage RegQ1e-81302
NC_013941:975353:996353996353997042690Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeantiterminator Q protein of prophage CP-933K2e-77288
NC_011601:717072:739255739255739944690Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomelate gene regulator7e-77286
NC_013361:1754346:175434617543461755035690Escherichia coli O26:H11 str. 11368 chromosome, complete genomelate gene regulator Q1e-75282
NC_008258:2045000:206153420615342062388855Shigella flexneri 5 str. 8401, complete genome2e-74278
NC_015663:4767443:477490847749084775597690Enterobacter aerogenes KCTC 2190 chromosome, complete genomephage antitermination protein Q6e-74276
NC_020063:2565605:257382025738202574509690Enterobacteriaceae bacterium strain FGI 57, complete genomePhage antitermination protein Q7e-72270
NC_021066:2226826:223472822347282235420693Raoultella ornithinolytica B6, complete genomephage antitermination protein Q5e-72270
NC_020260:1615135:163100716310071631702696Cronobacter sakazakii Sp291, complete genomehypothetical protein1e-68259
CU928145:1408280:142266514226651423360696Escherichia coli 55989 chromosome, complete genomeAntitermination protein Q4e-67254
NC_011748:1408280:142266514226651423360696Escherichia coli 55989, complete genomeAntitermination protein Q4e-67254
NC_009778:1556222:157209915720991572794696Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein1e-66253
NC_009801:1419324:143327114332711433960690Escherichia coli E24377A, complete genomephage antitermination protein Q1e-66252
NC_016514:2387312:239368323936832394372690Enterobacter cloacae EcWSU1 chromosome, complete genomephage Antitermination protein Q2e-66251
NC_008258:1934479:193790819379081938492585Shigella flexneri 5 str. 8401, complete genomeputative Q antiterminator encoded by prophage5e-61234
NC_007712:2806500:280962528096252810335711Sodalis glossinidius str. 'morsitans', complete genomeputative phage antiterminator Q protein3e-27122
NC_011415:2277559:228501922850192285690672Escherichia coli SE11 chromosome, complete genomehypothetical protein1e-24113
NC_009801:2193000:219859421985942199265672Escherichia coli E24377A, complete genomephage antitermination protein Q1e-24112
NC_010554:539122:541704541704542336633Proteus mirabilis HI4320, complete genomephage antitermination protein Q9e-22103
NC_012214:1974500:198721119872111987897687Erwinia pyrifoliae Ep1/96, complete genomeconserved phage protein1e-2099.8