Pre_GI: BLASTP Hits

Some Help

Query: NC_015693:53196:60388 Runella slithyformis DSM 19594 plasmid pRUNSL01, complete sequence

Start: 60388, End: 61200, Length: 813

Host Lineage: Runella slithyformis; Runella; Cytophagaceae; Cytophagales; Bacteroidetes; Bacteria

General Information: Environment: Fresh water, Host; Isolation: Fresh water lake; USA, Louisiana, Baton; Temp: Psychrophile. This is a species of curved, nonflexible, pink bacteria. The species is of interest because it is able to grow at temperatures as low as 4°C. The species epithet is derived from slithy, a nonsense word from Lewis Carroll's Jabberwocky for a fictional organism that is 'slithy' and the Latin word 'suffix' meaning '-like, in the shape of', yielding the Neo-Latin word 'slithyformis' meaning 'slithy in form'.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017079:2634623:264607226460722646950879Caldilinea aerophila DSM 14535 = NBRC 104270, complete genomeputative RNA polymerase ECF-type sigma factor6e-65247
NC_014364:4416467:442893744289374429710774Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-1376.6
NC_017955:3731480:383478738347873835308522Modestobacter marinus, complete genomeECF subfamily RNA polymerase sigma-24 subunit1e-1170.9
NC_007333:3626510:363293636329363633556621Thermobifida fusca YX, complete genomeRNA polymerase sigma-70 factor1e-1067
NC_018665:139646:154042154042154605564Exiguobacterium antarcticum B7 chromosome, complete genomeRNA polymerase sigma factor SigW2e-1066.2
NC_010556:141374:154091154091154654564Exiguobacterium sibiricum 255-15, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-1065.5
NC_012673:1540000:154720815472081547783576Exiguobacterium sp. AT1b, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-1065.5
NC_009012:2953638:301233430123343012897564Clostridium thermocellum ATCC 27405, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily7e-1064.7
NC_018750:3964784:398322139832213983961741Streptomyces venezuelae ATCC 10712, complete genomeRNA polymerase sigma-70 factor1e-0963.9
NC_003888:4251867:428257742825774283287711Streptomyces coelicolor A3(2), complete genomeRNA polymerase sigma-70 factor2e-0962.8
NC_016114:3655005:367332236733223674023702Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit3e-0962.4
NC_003155:5253923:527524952752495275962714Streptomyces avermitilis MA-4680, complete genomeRNA polymerase sigma-70 factor3e-0962.4
NC_014828:541874:550982550982551533552Ethanoligenens harbinense YUAN-3 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0962.4
NC_008536:5192235:520608052060805206640561Solibacter usitatus Ellin6076, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-0962
NC_015953:3684065:370288037028803703584705Streptomyces sp. SirexAA-E chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit6e-0961.6
NC_013929:5135285:515159451515945152304711Streptomyces scabiei 87.22 chromosome, complete genomesigma factor2e-0860.1
NC_014150:1006000:102603910260391026611573Brachyspira murdochii DSM 12563 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0860.1
NC_019908:1296870:130311113031111303680570Brachyspira pilosicoli P43/6/78 chromosome, complete genomeRNA polymerase sigma-24 subunit2e-0859.7
NC_010320:671699:672453672453672983531Thermoanaerobacter sp. X514 chromosome, complete genomeRNA polymerase sigma factor SigY2e-0859.7
NC_014330:1957725:196524019652401965806567Brachyspira pilosicoli 95/1000 chromosome, complete genomeRNA polymerase sigma-24 subunit2e-0859.7
NC_017243:685783:693812693812694471660Brachyspira intermedia PWS/A chromosome, complete genomeRpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma242e-0859.7
NC_014655:2782707:278688527868852787409525Leadbetterella byssophila DSM 17132 chromosome, complete genomeRNA polymerase, sigma subunit, ecf family3e-0859.3
NC_008554:1623041:164580616458061646414609Syntrophobacter fumaroxidans MPOB, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0858.9
NC_014483:4740214:475311047531104753685576Paenibacillus polymyxa E681 chromosome, complete genomeDNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein9e-0857.8
NC_004193:3215500:321633632163363216875540Oceanobacillus iheyensis HTE831, complete genomeRNA polymerase ECF-type sigma factor1e-0757
NC_019897:329945:346389346389346979591Thermobacillus composti KWC4 chromosome, complete genomesigma-70 family RNA polymerase sigma factor2e-0756.6
NC_014720:1161841:117795711779571178508552Caldicellulosiruptor kronotskyensis 2002 chromosome, completeRNA polymerase, sigma-24 subunit, ecf subfamily2e-0756.6
NC_008435:854576:876605876605877288684Rhodopseudomonas palustris BisA53, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0756.6
NC_012560:2315350:232811423281142328680567Azotobacter vinelandii DJ, complete genomeRNA polymerase sigma-70 factor2e-0756.6
NC_021150:2315362:232812623281262328692567Azotobacter vinelandii CA6, complete genomeRNA polymerase sigma factor SigX2e-0756.6
NC_007298:2170181:217566021756602176259600Dechloromonas aromatica RCB, complete genomeRNA polymerase sigma-70 factor2e-0756.2
NC_013730:4399643:441409444140944414645552Spirosoma linguale DSM 74, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0756.2
NC_014210:5752651:575645957564595757085627Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,RNA polymerase, sigma-24 subunit, ECF subfamily2e-0756.2
NC_011566:3994239:399821439982143998792579Shewanella piezotolerans WP3, complete genomeRNA polymerse sigmaE factor3e-0755.8
NC_011894:2747491:276819727681972768877681Methylobacterium nodulans ORS 2060, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0755.8
NC_012660:1579204:161309716130971613678582Pseudomonas fluorescens SBW25 chromosome, complete genomeRNA polymerase sigma factor AlgU3e-0755.8
NC_015846:369500:389672389672390220549Capnocytophaga canimorsus Cc5 chromosome, complete genomesigma-W factor4e-0755.5
NC_003450:788000:804408804408805028621Corynebacterium glutamicum ATCC 13032, complete genomeRNA polymerase sigma factor RpoE4e-0755.5
NC_009342:951761:964659964659965279621Corynebacterium glutamicum R chromosome, complete genomeRNA polymerase sigma factor RpoE4e-0755.5
NC_016627:4323370:436892043689204369462543Clostridium clariflavum DSM 19732 chromosome, complete genomesigma-70 family RNA polymerase sigma factor4e-0755.5
NC_012880:3241886:326005132600513260626576Dickeya dadantii Ech703, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-0755.5
NC_015064:2341152:236514523651452365786642Acidobacterium sp. MP5ACTX9 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0755.5
NC_014829:1376253:138816813881681388734567Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily5e-0755.1
NC_014829:178000:186205186205186768564Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily6e-0754.7
NC_013166:1149760:116568711656871166253567Kangiella koreensis DSM 16069, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily7e-0754.7
NC_021184:3149000:315104331510433151618576Desulfotomaculum gibsoniae DSM 7213, complete genomeRNA polymerase sigma factor, sigma-70 family7e-0754.7
NC_014392:969498:100562310056231006174552Caldicellulosiruptor obsidiansis OB47 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily9e-0754.3
NC_004557:691944:708021708021708554534Clostridium tetani E88, complete genomeRNA polymerase sigma factor sigV8e-0754.3
NC_010995:2547164:254810525481052548695591Cellvibrio japonicus Ueda107, complete genomeRNA polymerase sigma-H factor (Sigma-30)8e-0754.3
NC_015172:1120000:113691711369171137477561Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily8e-0754.3
NC_009437:2367842:237191723719172372468552Caldicellulosiruptor saccharolyticus DSM 8903, complete genomeRNA polymerase sigma factor SigY1e-0653.9
NC_011567:139598:151917151917152480564Anoxybacillus flavithermus WK1, complete genomeDNA-directed RNA polymerase specialized sigma subunit1e-0653.9
NC_017506:3717261:372361437236143724159546Marinobacter adhaerens HP15 chromosome, complete genomeRNA polymerase sigma-70 domain-containing protein1e-0653.5
NC_011898:426951:428407428407428976570Clostridium cellulolyticum H10, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0653.5
NC_012034:1783912:178800617880061788557552Anaerocellum thermophilum DSM 6725, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0653.5
NC_013730:1572889:158410515841051584656552Spirosoma linguale DSM 74, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0653.1
NC_016627:762000:776639776639777193555Clostridium clariflavum DSM 19732 chromosome, complete genomesigma-70 family RNA polymerase sigma factor3e-0652.8
NC_014721:1777644:178173617817361782287552Caldicellulosiruptor kristjanssonii 177R1B chromosome, completeRNA polymerase, sigma-24 subunit, ecf subfamily3e-0652.8
NC_012214:1117325:114286111428611143436576Erwinia pyrifoliae Ep1/96, complete genomeRNA polymerase sigma E3e-0652.4
NC_014652:1032711:107042510704251070976552Caldicellulosiruptor hydrothermalis 108 chromosome, completeRNA polymerase, sigma-24 subunit, ecf subfamily4e-0652
NC_007760:535825:551316551316552005690Anaeromyxobacter dehalogenans 2CP-C, complete genomesigma-24 (FecI-like)4e-0652
NC_015949:1180755:118484711848471185398552Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit6e-0651.6
NC_009438:1282022:129610312961031296681579Shewanella putrefaciens CN-32 chromosome, complete genomeRNA polymerase sigma factor RpoE6e-0651.6
NC_008750:3435495:343614234361423436720579Shewanella sp. W3-18-1, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily6e-0651.6