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Query: NC_015571:260664 Porphyromonas gingivalis TDC60, complete genome

Start: 260664, End: 279992, Length: 19329

Host Lineage: Porphyromonas gingivalis; Porphyromonas; Porphyromonadaceae; Bacteroidales; Bacteroidetes; Bacteria

General Information: This organism is associated with severe and chronic periodontal (tissues surrounding and supporting the tooth) diseases. Progression of the disease is caused by colonization by this organism in an anaerobic environment in host tissues and severe progression results in loss of the tissues supporting the tooth and eventually loss of the tooth itself. The black pigmentation characteristic of this bacterium comes from iron acquisition that does not use the typical siderophore system of other bacteria but accumulates hemin. Peptides appear to be the predominant carbon and energy source of this organism, perhaps in keeping with its ability to destroy host tissue. Oxygen tolerance systems play a part in establishment of the organism in the oral cavity, including a superoxide dismutase. Pathogenic factors include extracellular adhesins that mediate interactions with other bacteria as well as the extracellular matrix, and a host of degradative enzymes that are responsible for tissue degradation and spread of the organism including the gingipains, which are trypsin-like cysteine proteases.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_002950:2068500*2068500208891120412Porphyromonas gingivalis W83, complete genome022880BLASTN svgBLASTP svg
NC_010729:2147268*2147268216760520338Porphyromonas gingivalis ATCC 33277, complete genome018410BLASTN svgBLASTP svg
NC_015571:290355*29035531493124577Porphyromonas gingivalis TDC60, complete genome1e-20109BLASTN svgBLASTP svg
NC_002950:20984542098454211748919036Porphyromonas gingivalis W83, complete genome1e-20109BLASTN svgBLASTP svg
NC_015571:2002489*2002489204114838660Porphyromonas gingivalis TDC60, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_012560:5338707*5338707537299934293Azotobacter vinelandii DJ, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_015571:168617*16861719730428688Porphyromonas gingivalis TDC60, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_015571:440605*44060546793427330Porphyromonas gingivalis TDC60, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_010729:265791*26579129310327313Porphyromonas gingivalis ATCC 33277, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_002950:155873*15587318325427382Porphyromonas gingivalis W83, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_002516:6255854*6255854627999924146Pseudomonas aeruginosa PAO1, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_002927:5327094*5327094535399926906Bordetella bronchiseptica RB50, complete genome6e-0763.9BLASTN svgBLASTP svg