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Query: NC_015571:1207000 Porphyromonas gingivalis TDC60, complete genome

Start: 1207000, End: 1229584, Length: 22585

Host Lineage: Porphyromonas gingivalis; Porphyromonas; Porphyromonadaceae; Bacteroidales; Bacteroidetes; Bacteria

General Information: This organism is associated with severe and chronic periodontal (tissues surrounding and supporting the tooth) diseases. Progression of the disease is caused by colonization by this organism in an anaerobic environment in host tissues and severe progression results in loss of the tissues supporting the tooth and eventually loss of the tooth itself. The black pigmentation characteristic of this bacterium comes from iron acquisition that does not use the typical siderophore system of other bacteria but accumulates hemin. Peptides appear to be the predominant carbon and energy source of this organism, perhaps in keeping with its ability to destroy host tissue. Oxygen tolerance systems play a part in establishment of the organism in the oral cavity, including a superoxide dismutase. Pathogenic factors include extracellular adhesins that mediate interactions with other bacteria as well as the extracellular matrix, and a host of degradative enzymes that are responsible for tissue degradation and spread of the organism including the gingipains, which are trypsin-like cysteine proteases.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_002950:12701321270132129604725916Porphyromonas gingivalis W83, complete genome016360BLASTN svgBLASTP svg
NC_010729:10149571014957103460619650Porphyromonas gingivalis ATCC 33277, complete genome06948BLASTN svgBLASTP svg
NC_019960:1198067*1198067122826330197Prevotella dentalis DSM 3688 chromosome 1, complete sequence03120BLASTN svgBLASTP svg
NC_015311:2059879*2059879211653856660Prevotella denticola F0289 chromosome, complete genome02750BLASTN svgBLASTP svg
NC_015501:1941851*1941851198059938749Porphyromonas asaccharolytica DSM 20707 chromosome, complete3e-64254BLASTN svgBLASTP svg
NC_002950:1748582*1748582177154322962Porphyromonas gingivalis W83, complete genome3e-52214BLASTN svgBLASTP svg
NC_015571:1265121*1265121128814623026Porphyromonas gingivalis TDC60, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_010280:769639*76963979282723189Chlamydia trachomatis L2b/UCH-1/proctitis, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_010287:769600*76960079278823189Chlamydia trachomatis 434/Bu, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_013061:717752*71775274137623625Pedobacter heparinus DSM 2366, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_015744:769907*76990779249722591Chlamydia trachomatis L2c chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_013416:820989*82098984592424936Aggregatibacter actinomycetemcomitans D11S-1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_003919:1716831*1716831175716240332Xanthomonas axonopodis pv. citri str. 306, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015578:39804963980496402949649001Treponema primitia ZAS-2 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_012669:41182304118230414262824399Beutenbergia cavernae DSM 12333, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_006833:637964*63796465659918636Wolbachia endosymbiont strain TRS of Brugia malayi, complete3e-0661.9BLASTN svgBLASTP svg