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Query: NC_015571:168617:169648 Porphyromonas gingivalis TDC60, complete genome

Start: 169648, End: 170262, Length: 615

Host Lineage: Porphyromonas gingivalis; Porphyromonas; Porphyromonadaceae; Bacteroidales; Bacteroidetes; Bacteria

General Information: This organism is associated with severe and chronic periodontal (tissues surrounding and supporting the tooth) diseases. Progression of the disease is caused by colonization by this organism in an anaerobic environment in host tissues and severe progression results in loss of the tissues supporting the tooth and eventually loss of the tooth itself. The black pigmentation characteristic of this bacterium comes from iron acquisition that does not use the typical siderophore system of other bacteria but accumulates hemin. Peptides appear to be the predominant carbon and energy source of this organism, perhaps in keeping with its ability to destroy host tissue. Oxygen tolerance systems play a part in establishment of the organism in the oral cavity, including a superoxide dismutase. Pathogenic factors include extracellular adhesins that mediate interactions with other bacteria as well as the extracellular matrix, and a host of degradative enzymes that are responsible for tissue degradation and spread of the organism including the gingipains, which are trypsin-like cysteine proteases.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010729:2038118:203914920391492039763615Porphyromonas gingivalis ATCC 33277, complete genomehypothetical protein3e-107387
NC_002950:1981155:198573619857361986350615Porphyromonas gingivalis W83, complete genomehypothetical protein4e-106383
NC_021182:401129:420691420691421326636Clostridium pasteurianum BC1, complete genomeselenium metabolism protein YedF1e-23109
NC_018664:3009166:301034530103453010944600Clostridium acidurici 9a chromosome, complete genomeselenium metabolism protein, SirA-like protein3e-23108
NC_008261:2770468:277146227714622772034573Clostridium perfringens ATCC 13124, complete genomehypothetical protein8e-23106
NC_003366:2556457:255745125574512558023573Clostridium perfringens str. 13, complete genomehypothetical protein1e-22106
NC_008262:2433979:243497324349732435545573Clostridium perfringens SM101, complete genomepredicted Transcriptional regulator1e-22106
NC_003869:1812642:182649918264991827080582Thermoanaerobacter tengcongensis MB4, complete genomepredicted Transcriptional regulator6e-22103
NC_015519:426948:464491464491465111621Tepidanaerobacter sp. Re1 chromosome, complete genomeselenium metabolism protein YedF1e-21102
NC_014328:2326930:232857723285772329158582Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative SirA-like protein2e-2099
NC_007498:357484:383118383118383717600Pelobacter carbinolicus DSM 2380, complete genomepredicted redox protein, regulator of disulfide bond formation2e-2098.6
NC_013171:416279:416536416536417135600Anaerococcus prevotii DSM 20548, complete genomeSirA family protein4e-2097.8
NC_016584:4363382:436994943699494370542594Desulfosporosinus orientis DSM 765 chromosome, complete genomeselenium metabolism protein YedF1e-1789.4
NC_020409:437781:467615467615468229615Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completehypothetical protein3e-1375.1
NC_016629:3308329:332612233261223326754633Desulfovibrio africanus str. Walvis Bay chromosome, completeselenium metabolism protein YedF1e-1169.7
NC_016803:465453:487444487444488070627Desulfovibrio desulfuricans ND132 chromosome, complete genomeselenium metabolism protein YedF5e-1167.8
NC_016023:1143130:114835611483561148694339Bacillus coagulans 36D1 chromosome, complete genomeselenium metabolism protein YedF6e-1167.4
NC_014960:2111397:211808221180822118423342Anaerolinea thermophila UNI-1, complete genomehypothetical protein2e-0859.3