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Query: NC_015571:168617:168617 Porphyromonas gingivalis TDC60, complete genome

Start: 168617, End: 169651, Length: 1035

Host Lineage: Porphyromonas gingivalis; Porphyromonas; Porphyromonadaceae; Bacteroidales; Bacteroidetes; Bacteria

General Information: This organism is associated with severe and chronic periodontal (tissues surrounding and supporting the tooth) diseases. Progression of the disease is caused by colonization by this organism in an anaerobic environment in host tissues and severe progression results in loss of the tissues supporting the tooth and eventually loss of the tooth itself. The black pigmentation characteristic of this bacterium comes from iron acquisition that does not use the typical siderophore system of other bacteria but accumulates hemin. Peptides appear to be the predominant carbon and energy source of this organism, perhaps in keeping with its ability to destroy host tissue. Oxygen tolerance systems play a part in establishment of the organism in the oral cavity, including a superoxide dismutase. Pathogenic factors include extracellular adhesins that mediate interactions with other bacteria as well as the extracellular matrix, and a host of degradative enzymes that are responsible for tissue degradation and spread of the organism including the gingipains, which are trypsin-like cysteine proteases.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002950:1981155:1984705198470519857391035Porphyromonas gingivalis W83, complete genomerhodanese-like domain protein0701
NC_010729:2038118:2038118203811820391521035Porphyromonas gingivalis ATCC 33277, complete genomehypothetical protein0692
NC_002937:614000:6330966330966341361041Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completerhodanese-like domain protein4e-72271
NC_015693:53196:7119971199722421044Runella slithyformis DSM 19594 plasmid pRUNSL01, complete sequencetRNA 2-selenouridine synthase3e-71269
NC_008751:2774000:2780450278045027814901041Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomeRhodanese domain protein3e-71268
NC_008819:679320:7013037013037023551053Prochlorococcus marinus str. NATL1A, complete genomePredicted ATPase3e-62239
NC_007335:117572:1385271385271395791053Prochlorococcus marinus str. NATL2A, complete genomerhodanese-like9e-61234
NC_014153:2282725:2288370228837022894971128Thiomonas intermedia K12 chromosome, complete genometRNA 2-selenouridine synthase3e-43175
NC_003366:2356148:2370650237065023717201071Clostridium perfringens str. 13, complete genomeprobable ATP /GTP binding protein2e-42173
NC_013517:1038000:1052379105237910534071029Sebaldella termitidis ATCC 33386, complete genometRNA 2-selenouridine synthase6e-42171
NC_008262:2242432:2257146225714622582161071Clostridium perfringens SM101, complete genomehypothetical protein2e-41169
NC_014118:2316000:2334907233490723359741068Burkholderia sp. CCGE1002 chromosome chromosome 2, completetRNA 2-selenouridine synthase3e-39162
NC_017280:435347:4538924538924548961005Campylobacter jejuni subsp. jejuni M1 chromosome, complete genomeGTP-binding protein5e-35148
NC_008787:437786:4563324563324573361005Campylobacter jejuni subsp. jejuni 81-176, complete genometRNA 2-selenouridine synthase7e-35147
NC_015410:2505168:2525939252593925270391101Pseudomonas mendocina NK-01 chromosome, complete genometRNA 2-selenouridine synthase1e-34147
NC_014802:441000:458995458995459993999Campylobacter jejuni subsp. jejuni ICDCCJ07001 chromosome, completeGTP-binding protein9e-34144
NC_020260:2725201:2753961275396127551391179Cronobacter sakazakii Sp291, complete genometRNA 2-selenouridine synthase1e-26120
NC_015663:2807574:2807574280757428086501077Enterobacter aerogenes KCTC 2190 chromosome, complete genometRNA 2-selenouridine synthase5e-26118