Pre_GI: BLASTP Hits

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Query: NC_015410:2258800:2264795 Pseudomonas mendocina NK-01 chromosome, complete genome

Start: 2264795, End: 2265073, Length: 279

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocin is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005773:1333863:135101113510111351292282Pseudomonas syringae pv. phaseolicola 1448A, complete genomeDNA-binding protein HU family2e-24110
NC_020829:3434736:344845834484583448736279Pseudomonas denitrificans ATCC 13867, complete genomehistone family protein DNA-binding protein1e-23108
NC_002927:3827211:386754438675443867825282Bordetella bronchiseptica RB50, complete genomehistone-like DNA-binding protein2e-1064.3
NC_008570:2216736:221933122193312219603273Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeDNA-binding protein HU-beta4e-1063.5
NC_007484:1975322:199732119973211997593273Nitrosococcus oceani ATCC 19707, complete genomeHistone-like DNA-binding protein4e-1063.2
NC_004129:4596040:460138246013824601654273Pseudomonas fluorescens Pf-5, complete genomeDNA-binding protein HU, beta subunit1e-0961.6
NC_007626:1038214:104975510497551050087333Magnetospirillum magneticum AMB-1, complete genomeBacterial nucleoid DNA-binding protein1e-0961.6
NC_009380:4729340:473195847319584732233276Salinispora tropica CNB-440 chromosome, complete genomehistone family protein DNA-binding protein2e-0961.2
NC_010995:2312901:231914623191462319418273Cellvibrio japonicus Ueda107, complete genomeDNA-binding protein HU superfamily2e-0961.2
NC_007626:959684:993045993045993323279Magnetospirillum magneticum AMB-1, complete genomeBacterial nucleoid DNA-binding protein2e-0960.8
NC_008609:1976403:206114520611452061411267Pelobacter propionicus DSM 2379, complete genomehistone family protein DNA-binding protein3e-0960.8
NC_007645:2204066:221540322154032215675273Hahella chejuensis KCTC 2396, complete genomeBacterial nucleoid DNA-binding protein5e-0959.7
NC_012560:2348202:236469223646922364964273Azotobacter vinelandii DJ, complete genomehistone-like bacterial DNA-binding protein9e-0958.9
NC_021150:2348214:236470423647042364976273Azotobacter vinelandii CA6, complete genomehistone-like DNA-binding protein9e-0958.9
NC_002947:2589951:263308226330822633354273Pseudomonas putida KT2440, complete genomeDNA-binding protein HU-beta8e-0958.9
NC_007626:2354260:236467623646762364954279Magnetospirillum magneticum AMB-1, complete genomeBacterial nucleoid DNA-binding protein1e-0858.5
NC_007517:1792000:180801818080181808308291Geobacter metallireducens GS-15, complete genomeHistone-like DNA-binding protein1e-0858.5
NC_014365:2037506:205458320545832054888306Desulfarculus baarsii DSM 2075 chromosome, complete genomehistone family protein DNA-binding protein1e-0858.5
NC_007626:2204767:225746522574652257743279Magnetospirillum magneticum AMB-1, complete genomeBacterial nucleoid DNA-binding protein3e-0857.4
NC_005085:4157257:417384941738494174118270Chromobacterium violaceum ATCC 12472, complete genomeprobable DNA-binding protein hu-beta3e-0857.4
NC_016025:65923:693886938869780393Candidatus Chloracidobacterium thermophilum B chromosome chromosomenucleoid DNA-binding protein3e-0857
NC_008344:669498:669498669498669770273Nitrosomonas eutropha C91, complete genomehistone family protein DNA-binding protein3e-0857
NC_013715:1907503:192805219280521928339288Rothia mucilaginosa DY-18, complete genomebacterial nucleoid DNA-binding protein4e-0857
NC_016632:1049510:106168310616831061955273Serratia symbiotica str. 'Cinara cedri' chromosome, completehistone family protein DNA-binding protein5e-0856.6
NC_011725:1486635:149603414960341496306273Bacillus cereus B4264 chromosome, complete genomeDNA-binding protein HU4e-0856.6
NC_004603:3080614:310021231002123100487276Vibrio parahaemolyticus RIMD 2210633 chromosome I, completeDNA-binding protein HU-26e-0856.2
NC_004463:9087290:910034791003479100625279Bradyrhizobium japonicum USDA 110, complete genomeHNS-type DNA binding protein7e-0855.8
NC_016629:3396500:342726034272603427532273Desulfovibrio africanus str. Walvis Bay chromosome, completehistone family protein DNA-binding protein8e-0855.8
NC_007930:50801:564885648856763276Lactobacillus salivarius subsp. salivarius UCC118 plasmid pMP118,DNA-binding protein HU1e-0755.1
NC_010125:2884762:288998828899882890281294Gluconacetobacter diazotrophicus PAl 5, complete genomeputative DNA binding protein1e-0755.1
NC_015222:2089767:209658320965832096879297Nitrosomonas sp. AL212 chromosome, complete genomeintegration host factor, alpha subunit2e-0754.3
NC_013446:1889500:189372218937221893994273Comamonas testosteroni CNB-2, complete genomehistone-like DNA-binding protein2e-0754.3
NC_000964:2146000:222453322245332224811279Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein3e-0753.9
NC_015731:867377:917125917125917433309Nitrosomonas sp. Is79A3 chromosome, complete genomeIntegration host factor subunit alpha3e-0753.9
NC_013205:1187812:123004312300431230315273Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,histone family protein DNA-binding protein3e-0753.9
NC_008148:2290806:231410923141092314381273Rubrobacter xylanophilus DSM 9941, complete genomehistone-like DNA-binding protein4e-0753.5
NC_007946:3683371:370576937057693706041273Escherichia coli UTI89, complete genomeDNA-binding protein HU-alpha (HU-2)6e-0753.1
NC_016445:2663837:270243927024392702711273Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeDNA-binding protein HU5e-0753.1
NC_011992:1234610:124592112459211246193273Acidovorax ebreus TPSY, complete genomehistone family protein DNA-binding protein5e-0753.1
NC_008782:2781229:279335227933522793624273Acidovorax sp. JS42, complete genomehistone family protein DNA-binding protein5e-0753.1
NC_017271:2906000:292097929209792921278300Xanthomonas campestris pv. raphani 756C chromosome, completeintegration host factor subunit alpha6e-0752.8
NC_003902:2903493:291844529184452918744300Xanthomonas campestris pv. campestris str. ATCC 33913, completeintegration host factor subunit alpha6e-0752.8
NC_007086:1988000:199247519924751992774300Xanthomonas campestris pv. campestris str. 8004, complete genomeintegration host factor alpha subunit6e-0752.8
NC_015422:1694363:171325817132581713530273Alicycliphilus denitrificans K601 chromosome, complete genomehistone family protein DNA-binding protein8e-0752.4
NC_015571:411156:429426429426429692267Porphyromonas gingivalis TDC60, complete genomeDNA-binding protein HU1e-0652
NC_002737:1207880:122263712226371222912276Streptococcus pyogenes M1 GAS, complete genomehistone-like DNA-binding protein2e-0651.6
NC_008344:2434344:245062724506272450935309Nitrosomonas eutropha C91, complete genomeintegration host factor, alpha subunit2e-0651.6
NC_009332:653474:654160654160654435276Streptococcus pyogenes str. Manfredo chromosome, complete genomeDNA-binding protein HU2e-0651.6
NC_016002:1326500:133361313336131333909297Pseudogulbenkiania sp. NH8B, complete genomeintegration host factor subunit alpha1e-0651.6
NC_012912:2216749:224010222401022240401300Dickeya zeae Ech1591, complete genomeintegration host factor, alpha subunit1e-0651.6
NC_012880:2425330:242608824260882426387300Dickeya dadantii Ech703, complete genomeintegration host factor, alpha subunit1e-0651.6
NC_012779:1820244:182263618226361822932297Edwardsiella ictaluri 93-146, complete genomeintegration host factor, alpha subunit, putative1e-0651.6
NC_014539:1839840:184259318425931842865273Burkholderia sp. CCGE1003 chromosome 1, complete sequencehistone family protein DNA-binding protein1e-0651.6
NC_014152:191200:195060195060195332273Thermincola sp. JR, complete genomehistone family protein DNA-binding protein2e-0651.2
NC_014623:4999032:500264050026405003044405Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeintegration host factor subunit alpha2e-0651.2
NC_007298:2856104:286766328676632867965303Dechloromonas aromatica RCB, complete genomeintegration host factor alpha subunit2e-0651.2
NC_004757:1021355:103707810370781037386309Nitrosomonas europaea ATCC 19718, complete genomeintegration host factor alpha subunit2e-0651.2
NC_008095:4189082:419269841926984193087390Myxococcus xanthus DK 1622, complete genomeintegration host factor, alpha subunit2e-0650.8
NC_014483:39729:512505125051522273Paenibacillus polymyxa E681 chromosome, complete genomeDNA-binding protein HU (DNA-binding protein II)3e-0650.4
NC_016641:1639356:164996216499621650234273Paenibacillus terrae HPL-003 chromosome, complete genomeDNA-binding protein hu-alpha3e-0650.4
NC_008601:1094041:111318411131841113456273Francisella tularensis subsp. novicida U112, complete genomeDNA-binding protein HU-beta3e-0650.4
NC_004061:31500:357213572135993273Buchnera aphidicola str. Sg (Schizaphis graminum), complete genomeDNA-binding protein hu-alpha3e-0650.4
NC_009257:1023696:104281710428171043089273Francisella tularensis subsp. tularensis WY96-3418 chromosome,DNA-binding protein HU-beta3e-0650.4
NC_013166:1841446:185437918543791854681303Kangiella koreensis DSM 16069, complete genomeintegration host factor, alpha subunit3e-0650.4
NC_014972:3604534:361615136161513616432282Desulfobulbus propionicus DSM 2032 chromosome, complete genomehistone family protein DNA-binding protein5e-0650.1
NC_011833:31192:353093530935587279Buchnera aphidicola str. 5A (Acyrthosiphon pisum) chromosome,DNA-binding protein hu-alpha4e-0650.1
NC_014307:1619000:162263816226381623060423Ralstonia solanacearum CFBP2957 chromosome, complete genomeintegration host factor (ihf) subunit alpha4e-0650.1
NC_016860:1399290:141675614167561417055300Salmonella enterica subsp. enterica serovar Typhimurium strintegration host factor subunit alpha6e-0649.7
NC_016857:1358456:137592213759221376221300Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74integration host factor subunit alpha6e-0649.7
NC_016856:1411579:142904514290451429344300Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sintegration host factor subunit alpha6e-0649.7
NC_016832:1269018:128648512864851286784300Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Integration host factor subunit alpha6e-0649.7
NC_016831:1166868:118433111843311184630300Salmonella enterica subsp. enterica serovar Gallinarum/pullorumIntegration host factor alpha-subunit6e-0649.7
NC_016810:1358456:137592213759221376221300Salmonella enterica subsp. enterica serovar Typhimurium strintegration host factor subunit alpha6e-0649.7
NC_011147:1573470:157465315746531574952300Salmonella enterica subsp. enterica serovar Paratyphi A strintegration host factor subunit alpha6e-0649.7
NC_004631:1271500:128751212875121287811300Salmonella enterica subsp. enterica serovar Typhi Ty2, completeintegration host factor alpha subunit6e-0649.7
NC_011083:1408202:142411214241121424411300Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,integration host factor, alpha subunit6e-0649.7
NC_003197:1401603:141906914190691419368300Salmonella typhimurium LT2, complete genomeintegration host factor alpha subunit6e-0649.7
NC_016863:1359769:137723513772351377534300Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1integration host factor subunit alpha6e-0649.7
NC_017046:1358531:137599713759971376296300Salmonella enterica subsp. enterica serovar Typhimurium str. 798integration host factor subunit alpha6e-0649.7
NC_016148:1175999:117808711780871178362276Thermovirga lienii DSM 17291 chromosome, complete genomehistone family protein DNA-binding protein5e-0649.7
NC_018868:569423:616427616427616732306Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeintegration host factor subunit alpha5e-0649.7
NC_009483:2201986:222274022227402223015276Geobacter uraniireducens Rf4 chromosome, complete genomehistone family protein DNA-binding protein5e-0649.7
NC_008358:2574343:259651725965172596792276Hyphomonas neptunium ATCC 15444, complete genomeDNA-binding protein HU5e-0649.7
NC_009437:1556934:156381915638191564106288Caldicellulosiruptor saccharolyticus DSM 8903, complete genomehistone family protein DNA-binding protein6e-0649.7
NC_010658:1772994:178698617869861787285300Shigella boydii CDC 3083-94, complete genomeintegration host factor, alpha subunit6e-0649.7
NC_007613:1353500:135795113579511358250300Shigella boydii Sb227, complete genomeintegration host factor, alpha subunit6e-0649.7
NC_020063:2011019:202932820293282029627300Enterobacteriaceae bacterium strain FGI 57, complete genomeintegration host factor, alpha subunit6e-0649.7
NC_015740:2407500:244176324417632442065303Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeintegration host factor subunit alpha6e-0649.7
NC_009434:2577717:258467925846792584981303Pseudomonas stutzeri A1501, complete genomeintegration host factor subunit alpha6e-0649.7
NC_010815:40357:411964119641477282Geobacter lovleyi SZ plasmid pGLOV01, complete sequencehistone family protein DNA-binding protein7e-0649.3
NC_004545:15650:374933749337771279Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genomeDNA-binding protein HU7e-0649.3
NC_014532:3596097:360212336021233602398276Halomonas elongata DSM 2581, complete genomeK03530 DNA-binding protein HU-beta8e-0649.3
NC_018691:3525430:356799135679913568293303Alcanivorax dieselolei B5 chromosome, complete genomeIntegration host factor subunit alpha8e-0649.3
NC_002528:31191:353083530835586279Buchnera aphidicola str. APS (Acyrthosiphon pisum), completeDNA-binding protein hu-alpha7e-0649.3
NC_011834:31206:353233532335601279Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum) chromosome,DNA-binding protein hu-alpha7e-0649.3
NC_017252:31215:353313533135609279Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum) chromosome,DNA-binding protein hu-alpha7e-0649.3
NC_017253:31192:353093530935587279Buchnera aphidicola str. JF99 (Acyrthosiphon pisum) chromosome,DNA-binding protein hu-alpha7e-0649.3
NC_017254:31206:353233532335601279Buchnera aphidicola str. JF98 (Acyrthosiphon pisum) chromosome,DNA-binding protein hu-alpha7e-0649.3
NC_017255:31211:353283532835606279Buchnera aphidicola str. LL01 (Acyrthosiphon pisum) chromosome,DNA-binding protein hu-alpha7e-0649.3
NC_008463:2467219:247385924738592474161303Pseudomonas aeruginosa UCBPP-PA14, complete genomeintegration host factor, alpha subunit9e-0648.9
NC_002516:3079850:309981030998103100112303Pseudomonas aeruginosa PAO1, complete genomeintegration host factor subunit alpha9e-0648.9
NC_009656:2512733:251937325193732519675303Pseudomonas aeruginosa PA7 chromosome, complete genomeintegration host factor subunit alpha9e-0648.9
NC_018080:2288700:229534022953402295642303Pseudomonas aeruginosa DK2 chromosome, complete genomeintegration host factor subunit alpha9e-0648.9
NC_008781:2981868:298939229893922989763372Polaromonas naphthalenivorans CJ2, complete genomeintegration host factor, alpha subunit9e-0648.9