Pre_GI: BLASTP Hits

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Query: NC_015275:3407358:3425750 Clostridium lentocellum DSM 5427 chromosome, complete genome

Start: 3425750, End: 3426475, Length: 726

Host Lineage: Cellulosilyticum lentocellum; Cellulosilyticum; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolation: River sediment with paper mill waste; Temp: Mesophile; Temp: 40C; Isolation:river sediment with paper mill waste; Country:United Kingdom: River Don, Scotland. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This is a cellulolytic bacterium isolated from river sediment containing paper-mill waste.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014376:1842290:186064418606441861369726Clostridium saccharolyticum WM1 chromosome, complete genometwo component transcriptional regulator, LytTR family6e-124443
NC_014376:3796990:380806238080623808787726Clostridium saccharolyticum WM1 chromosome, complete genometwo component transcriptional regulator, LytTR family2e-121434
NC_016894:77853:840308403084764735Acetobacterium woodii DSM 1030 chromosome, complete genometwo component transcriptional regulator4e-22105
NC_014614:608946:611958611958612692735Clostridium sticklandii, complete genomehypothetical protein6e-22104
NC_016048:375676:399488399488400183696Oscillibacter valericigenes Sjm18-20, complete genomeputative two-component response regulator1e-1893.6
NC_016627:1485799:149181114918111492536726Clostridium clariflavum DSM 19732 chromosome, complete genomeresponse regulator of the LytR/AlgR family1e-1789.7
NC_009089:1283000:128229312822931283006714Clostridium difficile 630, complete genometwo-component response regulator2e-1789.4
NC_011898:3159411:319241031924103193168759Clostridium cellulolyticum H10, complete genometwo component transcriptional regulator, LytTR family4e-1788.2
NC_013174:501326:500595500595501329735Jonesia denitrificans DSM 20603, complete genometwo component transcriptional regulator, LytTR family4e-1684.7
NC_014624:287500:304428304428305174747Eubacterium limosum KIST612 chromosome, complete genomeResponse regulator of the LytR/AlgR family6e-1684.3
NC_013316:2033906:207459320745932075183591Clostridium difficile R20291, complete genomehypothetical protein2e-1583.2
NC_014363:1973670:198281319828131983520708Olsenella uli DSM 7084 chromosome, complete genometwo component transcriptional regulator, LytTR family2e-1582.8
NC_018704:2417902:242905824290582429768711Amphibacillus xylanus NBRC 15112, complete genomeputative two-component system response regulator3e-1582
NC_012778:207415:217309217309218022714Eubacterium eligens ATCC 27750, complete genometwo-component system, LytT family, response regulator3e-1582
NC_008261:576923:593925593925594641717Clostridium perfringens ATCC 13124, complete genomeDNA-binding response regulator5e-1581.3
NC_007907:2249607:225088322508832251608726Desulfitobacterium hafniense Y51, complete genomehypothetical protein3e-1375.5
NC_015172:850802:866232866232866960729Syntrophobotulus glycolicus DSM 8271 chromosome, complete genometwo component transcriptional regulator, LytTR family3e-1375.1
NC_014376:2921769:293831329383132939053741Clostridium saccharolyticum WM1 chromosome, complete genometwo component transcriptional regulator, LytTR family7e-1374.3
NC_016048:308342:328892328892329599708Oscillibacter valericigenes Sjm18-20, complete genomeputative two-component response regulator3e-1272.4
NC_012778:841934:882083882083882793711Eubacterium eligens ATCC 27750, complete genomehypothetical protein4e-1272
NC_017316:2581781:259771425977142598442729Enterococcus faecalis OG1RF chromosome, complete genomeresponse regulator3e-1272
NC_014387:281157:282005282005282703699Butyrivibrio proteoclasticus B316 chromosome 1, complete genomeLytTR/response regulator domain-containing protein3e-1272
NC_004668:3053119:306801830680183068746729Enterococcus faecalis V583, complete genomeresponse regulator5e-1271.2
NC_015690:8614000:862677486267748627514741Paenibacillus mucilaginosus KNP414 chromosome, complete genometwo-component response regulator7e-1270.9
NC_010520:1146000:116684911668491167565717Clostridium botulinum A3 str. Loch Maree, complete genomeLytTr DNA-binding domain family1e-1066.6
NC_015977:3424178:347917734791773479884708Roseburia hominis A2-183 chromosome, complete genomeresponse regulator of the lytr/algr family protein2e-1066.2
NC_018515:1406816:141371214137121414566855Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeresponse regulator containing CheY-like receiver and SARP domains2e-1065.9
NC_014219:999648:99964899964810007811134Bacillus selenitireducens MLS10 chromosome, complete genomeresponse regulator receiver and SARP domain protein3e-1065.5
NC_014032:338547:361332361332362084753Salinibacter ruber M8 chromosome, complete genomesensory transduction protein lytT7e-1064.3
NC_015589:2281054:228878522887852289513729Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeLytTr DNA-binding protein7e-1064.3
NC_009828:600349:601856601856602527672Thermotoga lettingae TMO, complete genometwo component transcriptional regulator, LytTR family8e-1064.3
NC_014393:1421122:1427612142761214287121101Clostridium cellulovorans 743B chromosome, complete genomeresponse regulator receiver and SARP domain-containing protein1e-0963.5
NC_006510:1501487:152070415207041521444741Geobacillus kaustophilus HTA426, complete genometranscriptional regulator1e-0963.5
NC_010658:2529033:255507825550782555812735Shigella boydii CDC 3083-94, complete genomeresponse regulator2e-0963.2
NC_008258:2473000:249696424969642497698735Shigella flexneri 5 str. 8401, complete genomeputative 2-component transcriptional regulator2e-0963.2
NC_004337:2478461:250322425032242503958735Shigella flexneri 2a str. 301, complete genomeputative 2-component transcriptional regulator2e-0963.2
CP002516:1419413:142028314202831421017735Escherichia coli KO11, complete genometwo component transcriptional regulator, LytTR family2e-0963.2
NC_013941:2928000:296958729695872970321735Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein2e-0963.2
NC_016822:2678691:270562327056232706357735Shigella sonnei 53G, complete genomeLytTR family two component transcriptional regulator2e-0963.2
NC_016902:1419413:142028314202831421017735Escherichia coli KO11FL chromosome, complete genomeLytTR family two component transcriptional regulator2e-0963.2
NC_015589:3852217:386341738634173864118702Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeresponse regulator receiver5e-0961.6
NC_004663:1499145:151426015142601514958699Bacteroides thetaiotaomicron VPI-5482, complete genometwo-component system response regulator7e-0960.8
NC_014633:583858:604072604072604797726Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequenceLytTR family two component transcriptional regulator1e-0860.5
NC_007677:324000:344731344731345489759Salinibacter ruber DSM 13855, complete genomealginate biosynthesis regulatory protein1e-0860.5
NC_020272:3187482:3201383320138332024591077Bacillus amyloliquefaciens IT-45, complete genomeresponse regulator MprA1e-0860.1
NC_009922:42696:456394563946355717Alkaliphilus oremlandii OhILAs, complete genometwo component transcriptional regulator, LytTR family2e-0859.7
NC_010520:3580000:359767035976703598434765Clostridium botulinum A3 str. Loch Maree, complete genomeDNA-binding response regulator, LytTr family2e-0859.3
NC_014633:837588:857228857228857983756Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequenceLytTR family two component transcriptional regulator3e-0858.9
NC_006347:2190000:219573921957392196437699Bacteroides fragilis YCH46, complete genometwo-component system response regulator3e-0858.9
NC_003228:2245181:225199322519932252691699Bacteroides fragilis NCTC 9343, complete genomeputative two-component system response regulator3e-0858.9
NC_016776:2237404:224442922444292245127699Bacteroides fragilis 638R, complete genomeputative two-component system response regulator3e-0858.9
NC_009699:3581376:361409836140983614862765Clostridium botulinum F str. Langeland chromosome, complete genomeLytTr family DNA-binding response regulator4e-0858.5
NC_017297:3594000:361271236127123613476765Clostridium botulinum F str. 230613 chromosome, complete genomeDNA-binding response regulator, LytTr family4e-0858.5
NC_009495:3502000:352046735204673521231765Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeDNA-binding response regulator, LytTr family4e-0858.5
NC_009697:3463736:349645534964553497219765Clostridium botulinum A str. ATCC 19397 chromosome, completeLytTr family DNA-binding response regulator4e-0858.5
NC_015510:6653159:666073866607386661478741Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeLytTR family two component transcriptional regulator5e-0858.2
NC_007333:3360000:336380033638003364594795Thermobifida fusca YX, complete genomeresponse regulator receiver6e-0857.8
NC_011830:3904034:392032539203253921080756Desulfitobacterium hafniense DCB-2, complete genometwo component transcriptional regulator, LytTR family7e-0857.8
NC_007907:2879568:289297128929712893726756Desulfitobacterium hafniense Y51, complete genomehypothetical protein9e-0857.4
NC_012563:3729817:376253737625373763301765Clostridium botulinum A2 str. Kyoto, complete genomeDNA-binding response regulator, LytTr family9e-0857.4
NC_009616:99647:116610116610117290681Thermosipho melanesiensis BI429 chromosome, complete genomeLytTR family two component transcriptional regulator8e-0857.4
NC_020211:2123819:214288721428872143606720Serratia marcescens WW4, complete genomeDNA-binding response regulator in two-component regulatory system with DcuS2e-0756.2
NC_009617:648000:666775666775667533759Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeLytTR family two component transcriptional regulator3e-0755.5
NC_008261:1249595:1267397126739712689171521Clostridium perfringens ATCC 13124, complete genometranscriptional regulator, AraC family4e-0755.5
NC_014152:2849991:286797228679722868697726Thermincola sp. JR, complete genometwo component transcriptional regulator, LytTR family4e-0755.1
NC_019968:1084288:112808911280891128805717Prevotella dentalis DSM 3688 chromosome 2, complete sequenceresponse regulator of the LytR/AlgR family5e-0754.7
NC_019968:1304450:131481713148171315533717Prevotella dentalis DSM 3688 chromosome 2, complete sequenceresponse regulator of the LytR/AlgR family5e-0754.7
NC_015977:3424178:347591234759123476646735Roseburia hominis A2-183 chromosome, complete genometwo-component system response regulator protein1e-0653.9
NC_015687:1811573:181561018156101816371762Clostridium acetobutylicum DSM 1731 chromosome, complete genomeresponse regulator9e-0753.9
NC_003030:1811820:181401018140101814771762Clostridium acetobutylicum ATCC 824, complete genomeResponse regulator (CheY-like receiver domain and DNA-binding HTH domain)9e-0753.9
NC_017295:1809386:181342318134231814184762Clostridium acetobutylicum EA 2018 chromosome, complete genomeResponse regulator (CheY-like receiver domain and DNA-binding HTH domain)9e-0753.9
NC_016940:470163:502234502234502953720Saprospira grandis str. Lewin chromosome, complete genometwo component transcriptional regulator, LytTR family protein8e-0753.9
NC_007644:1638083:165823516582351658972738Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, LytR/AlgR family1e-0653.5
NC_014624:3316916:332634833263483326935588Eubacterium limosum KIST612 chromosome, complete genomeLytTR family two component transcriptional regulator1e-0653.1
NC_016791:3807740:3806658380665838077521095Clostridium sp. BNL1100 chromosome, complete genomeresponse regulator containing CheY-like receiver and SARP domains2e-0653.1
NC_007575:973559:975967975967976665699Sulfurimonas denitrificans DSM 1251, complete genomeLytR/AlgR family transcriptional regulator2e-0653.1
NC_012004:470492:477357477357478097741Streptococcus uberis 0140J, complete genomeresponse regulator protein2e-0652.8
NC_015566:2039431:206318320631832063902720Serratia sp. AS12 chromosome, complete genomeresponse regulator receiver and unknown domain-containing protein2e-0652.8
NC_021182:1473535:147521614752161475986771Clostridium pasteurianum BC1, complete genomeresponse regulator of the LytR/AlgR family2e-0652.4
NC_020126:8984500:898947889894788990179702Myxococcus stipitatus DSM 14675, complete genometwo component transcriptional regulator, LytTR family protein3e-0652.4
NC_014219:999648:1007214100721410083561143Bacillus selenitireducens MLS10 chromosome, complete genomeresponse regulator receiver and SARP domain protein3e-0652.4
NC_017096:779550:7851687851687865801413Caldisericum exile AZM16c01, complete genomeNtrC family two-component system response regulator4e-0652
NC_013061:1856969:187473818747381875517780Pedobacter heparinus DSM 2366, complete genomeLytTr DNA-binding region3e-0652
NC_010718:2265447:226544722654472266163717Natranaerobius thermophilus JW/NM-WN-LF, complete genometwo component transcriptional regulator, LytTR family6e-0651.2
NC_020064:2728569:273017427301742730890717Serratia marcescens FGI94, complete genomeresponse regulator of citrate/malate metabolism7e-0651.2
NC_012984:3077004:308966030896603090403744Lactobacillus plantarum JDM1, complete genomeresponse regulator; accesory gene regulator protein A7e-0651.2
NC_009792:642881:644563644563645282720Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein9e-0650.8