Pre_GI: BLASTN Hits

Some Help

Query: NC_015224:4473230 Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,

Start: 4473230, End: 4497145, Length: 23916

Host Lineage: Yersinia enterocolitica; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This species is a food and waterborn pathogen that causes gastroenteritis (inflammation of the mucous membranes of the stomach and intestine) and is able to proliferate at temperatures as low as 4 degrees C.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_013961:3709800*3709800373182522026Erwinia amylovora, complete genome4e-178632BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome2e-177630BLASTN svgBLASTP svg
NC_012214:3931824*3931824395459922776Erwinia pyrifoliae Ep1/96, complete genome1e-171611BLASTN svgBLASTP svg
NC_006905:3780000*3780000380296822969Salmonella enterica subsp. enterica serovar Choleraesuis str8e-167595BLASTN svgBLASTP svg
NC_015224:31910003191000321042819429Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,2e-84321BLASTN svgBLASTP svg
NC_013282:116649*11664913955822910Cronobacter turicensis, complete genome1e-57232BLASTN svgBLASTP svg
NC_010498:3988351*3988351401846830118Escherichia coli SMS-3-5, complete genome8e-56226BLASTN svgBLASTP svg
AP010958:4707712*4707712472598018269Escherichia coli O103:H2 str. 12009 DNA, complete genome1e-54222BLASTN svgBLASTP svg
CP002185:39645003964500398613821639Escherichia coli W, complete genome1e-54222BLASTN svgBLASTP svg
CP002516:119935*11993514694827014Escherichia coli KO11, complete genome1e-54222BLASTN svgBLASTP svg
CU928145:41319244131924415503823115Escherichia coli 55989 chromosome, complete genome1e-54222BLASTN svgBLASTP svg
NC_009800:3787320*3787320380985222533Escherichia coli HS, complete genome1e-54222BLASTN svgBLASTP svg
NC_009801:40739684073968409617422207Escherichia coli E24377A, complete genome1e-54222BLASTN svgBLASTP svg
NC_010468:111504*11150413814926646Escherichia coli ATCC 8739, complete genome1e-54222BLASTN svgBLASTP svg
NC_011748:41319244131924415503823115Escherichia coli 55989, complete genome1e-54222BLASTN svgBLASTP svg
NC_013421:57961579617736519405Pectobacterium wasabiae WPP163, complete genome6e-26127BLASTN svgBLASTP svg
NC_015224:2095816*2095816211873722922Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,5e-23117BLASTN svgBLASTP svg
NC_008309:502983*50298352926826286Haemophilus somnus 129PT, complete genome2e-22115BLASTN svgBLASTP svg
NC_013446:4723380*4723380475330129922Comamonas testosteroni CNB-2, complete genome2e-22115BLASTN svgBLASTP svg
NC_010634:3692321*3692321371595823638Yersinia pseudotuberculosis PB1/+, complete genome1e-20109BLASTN svgBLASTP svg
NC_010465:933488*93348895909925612Yersinia pseudotuberculosis YPIII, complete genome1e-20109BLASTN svgBLASTP svg
NC_006155:3779381*3779381380559426214Yersinia pseudotuberculosis IP 32953, complete genome1e-20109BLASTN svgBLASTP svg
NC_015224:13910881391088142166930582Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,5e-20107BLASTN svgBLASTP svg
NC_014117:442616*44261651580273187Burkholderia sp. CCGE1002 chromosome chromosome 1, complete2e-19105BLASTN svgBLASTP svg
NC_015224:15147471514747154041825672Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,2e-19105BLASTN svgBLASTP svg
NC_008702:815264*81526484609430831Azoarcus sp. BH72, complete genome8e-19103BLASTN svgBLASTP svg
NC_002516:6255854*6255854627999924146Pseudomonas aeruginosa PAO1, complete genome3e-18101BLASTN svgBLASTP svg
NC_009092:4585784*4585784461549929716Shewanella loihica PV-4, complete genome3e-18101BLASTN svgBLASTP svg
NC_010102:39554793955479397940323925Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,3e-18101BLASTN svgBLASTP svg
NC_011080:39764413976441399977023330Salmonella enterica subsp. enterica serovar Newport str. SL254,3e-18101BLASTN svgBLASTP svg
NC_020209:4768500*4768500481226743768Pseudomonas poae RE*1-1-14, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_009053:2025782*2025782204904723266Actinobacillus pleuropneumoniae L20, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_003197:40058574005857402918723331Salmonella typhimurium LT2, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_003198:38241873824187384903924853Salmonella enterica subsp. enterica serovar Typhi str. CT18,8e-1693.7BLASTN svgBLASTP svg
NC_004631:38096783809678383452924852Salmonella enterica subsp. enterica serovar Typhi Ty2, complete8e-1693.7BLASTN svgBLASTP svg
NC_006511:37940173794017381725023234Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC8e-1693.7BLASTN svgBLASTP svg
NC_006905:39427533942753396819425442Salmonella enterica subsp. enterica serovar Choleraesuis str8e-1693.7BLASTN svgBLASTP svg
NC_011083:40200004020000404339423395Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,8e-1693.7BLASTN svgBLASTP svg
NC_011149:39303583930358395376323406Salmonella enterica subsp. enterica serovar Agona str. SL483,8e-1693.7BLASTN svgBLASTP svg
NC_005070:1588419*1588419161715628738Synechococcus sp. WH 8102, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_015224:1914833*1914833193998525153Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,1e-1489.7BLASTN svgBLASTP svg
NC_007298:3764048*3764048379032226275Dechloromonas aromatica RCB, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_015976:1893076*1893076193522042145Sphingobium sp. SYK-6, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_013421:13978411397841141728819448Pectobacterium wasabiae WPP163, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_012751:594851*59485161768022830Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), complete2e-1385.7BLASTN svgBLASTP svg
NC_004547:2285092*2285092230801122920Erwinia carotovora subsp. atroseptica SCRI1043, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_003143:1033500*1033500105953426035Yersinia pestis CO92, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_003919:4946884*4946884497347526592Xanthomonas axonopodis pv. citri str. 306, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_004088:3661601*3661601368761226012Yersinia pestis KIM, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_004603:37032037032039589225573Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete8e-1383.8BLASTN svgBLASTP svg
NC_005810:3964468*3964468399026325796Yersinia pestis biovar Microtus str. 91001, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_008149:35294283529428355543826011Yersinia pestis Nepal516, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_008150:36122436122439094629723Yersinia pestis Antiqua, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_013416:1748848*1748848176691818071Aggregatibacter actinomycetemcomitans D11S-1, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_014500:2479814*2479814250755827745Dickeya dadantii 3937 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_010159:138879*13887916617427296Yersinia pestis Angola, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010067:37539713753971377672522755Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete2e-1075.8BLASTN svgBLASTP svg
NC_007614:620500*62050064203621537Nitrosospira multiformis ATCC 25196 chromosome 1, complete3e-0971.9BLASTN svgBLASTP svg
NC_010465:22828742282874230925826385Yersinia pseudotuberculosis YPIII, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015224:3225000*3225000325159926600Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,5e-0867.9BLASTN svgBLASTP svg
NC_007516:774489*77448981616441676Synechococcus sp. CC9605, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_011083:3915500*3915500393961024111Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,2e-0765.9BLASTN svgBLASTP svg
NC_010102:38515003851500387645224953Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,2e-0765.9BLASTN svgBLASTP svg
NC_007513:1503955*1503955152946525511Synechococcus sp. CC9902, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_003197:3902500*3902500392838425885Salmonella typhimurium LT2, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_002939:579087*57908760819229106Geobacter sulfurreducens PCA, complete genome3e-0661.9BLASTN svgBLASTP svg