Pre_GI: BLASTN Hits

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Query: NC_015224:4101939 Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,

Start: 4101939, End: 4121061, Length: 19123

Host Lineage: Yersinia enterocolitica; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This species is a food and waterborn pathogen that causes gastroenteritis (inflammation of the mucous membranes of the stomach and intestine) and is able to proliferate at temperatures as low as 4 degrees C.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_020181:3585898*3585898362589840001Enterobacter aerogenes EA1509E, complete genome6e-81309BLASTN svgBLASTP svg
NC_013961:3413011*3413011343613523125Erwinia amylovora, complete genome5e-140505BLASTN svgBLASTP svg
NC_013421:40060854006085403278526701Pectobacterium wasabiae WPP163, complete genome8e-145521BLASTN svgBLASTP svg
NC_006370:16600016600018867522676Photobacterium profundum SS9 chromosome 1, complete sequence6e-0763.9BLASTN svgBLASTP svg
NC_009439:3394174*3394174341925525082Pseudomonas mendocina ymp, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_010067:33103363310336336496054625Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete7e-136492BLASTN svgBLASTP svg
NC_010658:42573104257310427618618877Shigella boydii CDC 3083-94, complete genome2e-90341BLASTN svgBLASTP svg
NC_007613:41197714119771413859918829Shigella boydii Sb227, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_014153:2282725*2282725230725524531Thiomonas intermedia K12 chromosome, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_003919:50235005023500504659923100Xanthomonas axonopodis pv. citri str. 306, complete genome9e-0660BLASTN svgBLASTP svg