Pre_GI: BLASTN Hits

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Query: NC_015224:2017781 Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,

Start: 2017781, End: 2040352, Length: 22572

Host Lineage: Yersinia enterocolitica; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This species is a food and waterborn pathogen that causes gastroenteritis (inflammation of the mucous membranes of the stomach and intestine) and is able to proliferate at temperatures as low as 4 degrees C.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009778:12222731222273124884426572Enterobacter sakazakii ATCC BAA-894, complete genome1e-116428BLASTN svgBLASTP svg
NC_014562:18442681844268187632632059Pantoea vagans C9-1 chromosome, complete genome4e-113416BLASTN svgBLASTP svg
NC_014837:25868702586870261129224423Pantoea sp. At-9b chromosome, complete genome1e-110408BLASTN svgBLASTP svg
NC_012917:2921932*2921932295050128570Pectobacterium carotovorum subsp. carotovorum PC1, complete genome2e-105391BLASTN svgBLASTP svg
NC_014500:3023762*3023762306170037939Dickeya dadantii 3937 chromosome, complete genome1e-88335BLASTN svgBLASTP svg
NC_012912:1788308*1788308184662758320Dickeya zeae Ech1591, complete genome7e-87329BLASTN svgBLASTP svg
NC_013592:1730505*1730505176316532661Dickeya dadantii Ech586, complete genome2e-84321BLASTN svgBLASTP svg
NC_013956:44900004490000451370923710Pantoea ananatis LMG 20103 chromosome, complete genome8e-62246BLASTN svgBLASTP svg
NC_015968:28457512845751288222136471Enterobacter asburiae LF7a chromosome, complete genome3e-61244BLASTN svgBLASTP svg
NC_013956:25239552523955254416020206Pantoea ananatis LMG 20103 chromosome, complete genome2e-47198BLASTN svgBLASTP svg
NC_012880:1765920*1765920184383077911Dickeya dadantii Ech703, complete genome3e-46194BLASTN svgBLASTP svg
NC_003197:2894344*2894344294288048537Salmonella typhimurium LT2, complete genome2e-44188BLASTN svgBLASTP svg
NC_006511:27184012718401273705118651Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC4e-42180BLASTN svgBLASTP svg
NC_010102:28621782862178288012617949Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,4e-42180BLASTN svgBLASTP svg
NC_011080:28704282870428289413023703Salmonella enterica subsp. enterica serovar Newport str. SL254,4e-42180BLASTN svgBLASTP svg
NC_011083:2847318*2847318291739170074Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,4e-42180BLASTN svgBLASTP svg
NC_004547:1970686*1970686199651325828Erwinia carotovora subsp. atroseptica SCRI1043, complete genome6e-32147BLASTN svgBLASTP svg
NC_012779:2281700*2281700230559923900Edwardsiella ictaluri 93-146, complete genome9e-31143BLASTN svgBLASTP svg
NC_006905:28576992857699289909341395Salmonella enterica subsp. enterica serovar Choleraesuis str4e-30141BLASTN svgBLASTP svg
NC_011740:1189455*1189455121259923145Escherichia fergusonii ATCC 35469, complete genome5e-26127BLASTN svgBLASTP svg
NC_014121:13573391357339138312725789Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete1e-20109BLASTN svgBLASTP svg
NC_019940:293476*29347631150418029Thioflavicoccus mobilis 8321 chromosome, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_015731:990000*990000101276122762Nitrosomonas sp. Is79A3 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_011080:2761403*2761403277959918197Salmonella enterica subsp. enterica serovar Newport str. SL254,3e-0661.9BLASTN svgBLASTP svg