Pre_GI: BLASTP Hits

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Query: NC_014560:518582:541275 Helicobacter pylori SJM180 chromosome, complete genome

Start: 541275, End: 541724, Length: 450

Host Lineage: Helicobacter pylori; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This strain was isolated from an Amerindian resident of San Juan Miraflores shantytown in Lima Peru with gastritis. This genus consists of organisms that colonize the mucosal layer of the gastrointestinal tract or are found enterohepatically (in the liver). It was only recently discovered (1983) by two Australians (Warren and Marshall) that this organism was associated with peptic ulcers. It is one of the most common chronic infectious organisms, and is found in half the world's population. This organism attacks the gastric epithilial surface, resulting in chronic gastritis, and can cause more severe diseases including those that lead to gastric carcinomas and lymphomas, peptic ulcers, and severe diarrhea. It is an extracellular pathogen that persists in the gastric environment, which has a very low pH, by production of the urease enzyme, which converts urea to ammonia and carbon dioxide, a process which can counteract the acidic environment by production of a base. The toxins include cytolethal distending toxin, vacuolating cytotoxin (VacA) that induces host epithelial cell apopoptosis (cell death), and the cytotoxin associated antigen (CagA) which results in alteration to the host cell signalling pathways. The CagA protein is translocated into host cells by a type IV secretion system encoded by the cag pathogenicity island.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014256:683384:708049708049708498450Helicobacter pylori B8 chromosome, complete genome50S ribosomal protein L91e-64244
NC_017063:775337:793883793883794332450Helicobacter pylori ELS37 chromosome, complete genome50S ribosomal protein L92e-64243
NC_017360:1052473:107641510764151076864450Helicobacter pylori 35A chromosome, complete genome50S ribosomal protein L96e-64242
NC_017372:855384:879120879120879569450Helicobacter pylori India7 chromosome, complete genome50S ribosomal protein L91e-63241
NC_017354:848500:872491872491872940450Helicobacter pylori 52 chromosome, complete genome50S ribosomal protein L91e-63241
NC_017375:872478:896108896108896557450Helicobacter pylori 83 chromosome, complete genome50S ribosomal protein L98e-63238
NC_017365:848500:872698872698873147450Helicobacter pylori F30, complete genome50S ribosomal protein L98e-63238
NC_017368:852490:876118876118876567450Helicobacter pylori F16, complete genome50S ribosomal protein L98e-63238
NC_009850:972692:976447976447976893447Arcobacter butzleri RM4018, complete genome50S ribosomal protein L91e-26118
NC_017187:937649:941404941404941850447Arcobacter butzleri ED-1, complete genome50S ribosomal protein L91e-26118
NC_009802:931129:951781951781952227447Campylobacter concisus 13826, complete genomeribosomal protein L92e-25114
NC_014209:2257316:228320322832032283646444Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,ribosomal protein L93e-21100
NC_010321:2319820:233899623389962339439444Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, complete50S ribosomal protein L93e-2097.1
NC_014964:2301835:232101123210112321454444Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, complete50S ribosomal protein L93e-2097.1
NC_009698:3706154:373957737395773740020444Clostridium botulinum A str. Hall chromosome, complete genome50S ribosomal protein L94e-1890.1
NC_009495:3832500:386593338659333866376444Clostridium botulinum A str. ATCC 3502 chromosome, complete genome50S ribosomal protein L94e-1890.1
NC_011653:1728000:173647617364761736931456Thermosipho africanus TCF52B, complete genomeribosomal protein L95e-1889.7
NC_017297:3939328:397210339721033972546444Clostridium botulinum F str. 230613 chromosome, complete genome50S ribosomal protein L91e-1788.6
NC_009699:3940984:397440839744083974851444Clostridium botulinum F str. Langeland chromosome, complete genome50S ribosomal protein L91e-1788.6
NC_010520:3938490:397194039719403972383444Clostridium botulinum A3 str. Loch Maree, complete genomeribosomal protein L91e-1788.6
NC_010516:3903867:393729039372903937733444Clostridium botulinum B1 str. Okra, complete genomeribosomal protein L91e-1788.6
NC_017095:1461520:146798814679881468440453Fervidobacterium pennivorans DSM 9078 chromosome, complete genome50S ribosomal protein L92e-1787.4
NC_014218:1948165:196217719621771962623447Arcanobacterium haemolyticum DSM 20595 chromosome, complete genomeribosomal protein L93e-1684
NC_012559:2563922:256964225696422570091450Laribacter hongkongensis HLHK9, complete genomeRplI1e-1581.6
NC_012781:3087467:309770230977023098148447Eubacterium rectale ATCC 33656, complete genome50S ribosomal protein L91e-1581.6
NC_019897:4014485:401644640164464016889444Thermobacillus composti KWC4 chromosome, complete genome50S ribosomal protein L91e-1582
NC_010003:605961:613684613684614133450Petrotoga mobilis SJ95, complete genomeribosomal protein L92e-1581.3
NC_010163:171148:1869271869271893832457Acholeplasma laidlawii PG-8A chromosome, complete genomebifunctional signaling protein/ribosomal protein L93e-1580.9
NC_015977:3424178:352984435298443530311468Roseburia hominis A2-183 chromosome, complete genome50S ribosomal protein L96e-1579.7
NC_016935:8716704:871830887183088718751444Paenibacillus mucilaginosus 3016 chromosome, complete genome50S ribosomal protein L97e-1579.3
NC_014622:5683400:570317457031745703617444Paenibacillus polymyxa SC2 chromosome, complete genome50S ribosomal protein L91e-1478.6
NC_015687:3907000:392493239249323925375444Clostridium acetobutylicum DSM 1731 chromosome, complete genome50S ribosomal protein L94e-1477
NC_003030:3902000:392335039233503923793444Clostridium acetobutylicum ATCC 824, complete genome50S ribosomal protein L94e-1477
NC_017295:3901773:392270139227013923144444Clostridium acetobutylicum EA 2018 chromosome, complete genome50S ribosomal protein L94e-1477
NC_014334:99000:110968110968111423456Lactobacillus casei str. Zhang chromosome, complete genomeribosomal protein L95e-1476.6
NC_008526:74500:109834109834110289456Lactobacillus casei ATCC 334, complete genomeRibosomal protein L95e-1476.6
NC_015671:3470903:349372234937223494171450Cellvibrio gilvus ATCC 13127 chromosome, complete genome50S ribosomal protein L97e-1475.9
NC_009328:3504454:352628435262843526733450Geobacillus thermodenitrificans NG80-2 chromosome, complete genome50S ribosomal protein L98e-1475.9
NC_007929:1805000:180912418091241809573450Lactobacillus salivarius subsp. salivarius UCC118, complete genomeLSU ribosomal protein L9P9e-1475.9
NC_007951:2206263:220915222091522209604453Burkholderia xenovorans LB400 chromosome 1, complete sequenceRibosomal protein L92e-1374.7
NC_012778:2015409:201679120167912017237447Eubacterium eligens ATCC 27750, complete genomelarge subunit ribosomal protein L92e-1374.3
NC_013525:1953920:195523319552331955682450Thermobaculum terrenum ATCC BAA-798 chromosome 1, complete genomeribosomal protein L93e-1373.9
NC_008699:4922465:494122849412284941674447Nocardioides sp. JS614, complete genomeribosomal protein L96e-1372.8
NC_014972:2089003:210048821004882100946459Desulfobulbus propionicus DSM 2032 chromosome, complete genome50S ribosomal protein L9P1e-1272
NC_007973:2150962:215247421524742152926453Ralstonia metallidurans CH34 chromosome 1, complete sequenceribosomal protein L91e-1272
NC_014314:576465:602232602232602684453Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, complete50S ribosomal protein L92e-1271.2
NC_004461:1:202722027220718447Staphylococcus epidermidis ATCC 12228, complete genome50S ribosomal protein L92e-1270.9
NC_002976:2580485:259597225959722596418447Staphylococcus epidermidis RP62A, complete genomeribosomal protein L92e-1270.9
NC_009953:5733211:573626457362645736710447Salinispora arenicola CNS-205 chromosome, complete genome50S ribosomal protein L94e-1270.1
NC_015167:313506:334534334534334986453Cellulophaga lytica DSM 7489 chromosome, complete genome50S ribosomal protein L96e-1269.7
NC_018681:9262000:926489792648979265349453Nocardia brasiliensis ATCC 700358 chromosome, complete genome50S ribosomal protein L96e-1269.7
NC_009338:912894:916383916383916838456Mycobacterium gilvum PYR-GCK chromosome, complete genome50S ribosomal protein L97e-1269.7
NC_012918:1697860:173257017325701733013444Geobacter sp. M21 chromosome, complete genome50S ribosomal protein L91e-1168.2
NC_009706:3882500:394482339448233945266444Clostridium kluyveri DSM 555 chromosome, complete genome50S ribosomal protein L91e-1168.9
NC_011837:3814000:387632638763263876769444Clostridium kluyveri NBRC 12016, complete genome50S ribosomal protein L91e-1168.9
NC_014376:317312:332156332156332602447Clostridium saccharolyticum WM1 chromosome, complete genomeribosomal protein L91e-1168.9
NC_016609:6361862:636213863621386362584447Niastella koreensis GR20-10 chromosome, complete genome50S ribosomal protein L9P1e-1168.9
NC_018012:1274500:127609012760901276539450Thiocystis violascens DSM 198 chromosome, complete genome50S ribosomal protein L91e-1168.9
NC_005945:5202176:521145052114505211896447Bacillus anthracis str. Sterne, complete genome50S ribosomal protein L93e-1167.4
NC_006274:5267585:528370152837015284147447Bacillus cereus E33L, complete genome50S ribosomal protein L93e-1167.4
NC_007530:5197854:521020552102055210651447Bacillus anthracis str. 'Ames Ancestor', complete genome50S ribosomal protein L93e-1167.4
NC_014335:5165211:517838051783805178826447Bacillus cereus biovar anthracis str. CI chromosome, complete50S ribosomal protein L93e-1167.4
NC_013222:2795919:281386728138672814319453Robiginitalea biformata HTCC2501, complete genome50S ribosomal protein L93e-1167.4
NC_004369:2968251:300083130008313001283453Corynebacterium efficiens YS-314, complete genome50S ribosomal protein L93e-1167
NC_003997:5200805:521007952100795210525447Bacillus anthracis str. Ames, complete genome50S ribosomal protein L93e-1167.4
NC_012472:5239944:525229752522975252743447Bacillus cereus 03BB102, complete genome50S ribosomal protein L93e-1167.4
NC_017200:5325977:533828653382865338732447Bacillus thuringiensis serovar finitimus YBT-020 chromosome,50S ribosomal protein L93e-1167.4
NC_016771:5191937:520424452042445204690447Bacillus cereus NC7401, complete genome50S ribosomal protein L93e-1167.4
NC_011658:5239509:525181752518175252263447Bacillus cereus AH187 chromosome, complete genome50S ribosomal protein L93e-1167.4
NC_016779:5189139:520569252056925206138447Bacillus cereus F837/76 chromosome, complete genome50S ribosomal protein L93e-1167.4
NC_012659:5200831:521010552101055210551447Bacillus anthracis str. A0248, complete genome50S ribosomal protein L93e-1167.4
NC_005957:5203915:522046952204695220915447Bacillus thuringiensis serovar konkukian str. 97-27, complete50S ribosomal protein L93e-1167.4
NC_003888:4251867:430451343045134304959447Streptomyces coelicolor A3(2), complete genome50S ribosomal protein L95e-1166.6
NC_014934:11341:352993529935748450Cellulophaga algicola DSM 14237 chromosome, complete genomelsu ribosomal protein l9p5e-1166.6
NC_014355:139324:140656140656141141486Candidatus Nitrospira defluvii, complete genome50S ribosomal protein L96e-1166.2
NC_010475:1563578:158043715804371580895459Synechococcus sp. PCC 7002, complete genomeribosomal protein L96e-1166.2
NC_004722:5381208:539447053944705394916447Bacillus cereus ATCC 14579, complete genome50S ribosomal protein L91e-1065.5
NC_004757:230541:233577233577234032456Nitrosomonas europaea ATCC 19718, complete genomeRibosomal protein L91e-1065.5
NC_017059:1727095:173019217301921730755564Rhodospirillum photometricum DSM 122, complete genome50S ribosomal protein L91e-1065.1
NC_021177:4041915:406245440624544062900447Streptomyces fulvissimus DSM 40593, complete genome50S ribosomal protein L91e-1065.1
NC_015731:3274739:327848032784803278935456Nitrosomonas sp. Is79A3 chromosome, complete genome50S ribosomal protein L92e-1064.3
NC_018750:3988196:400524040052404005686447Streptomyces venezuelae ATCC 10712, complete genomeLSU ribosomal protein L9p2e-1064.7
NC_007168:16431:183951839518841447Staphylococcus haemolyticus JCSC1435, complete genome50S ribosomal protein L93e-1064.3
NC_006582:4256915:428498242849824285425444Bacillus clausii KSM-K16, complete genome50S ribosomal protein L93e-1064.3
NC_008710:108057:110916110916111413498Borrelia turicatae 91E135, complete genomeLSU ribosomal protein L9P4e-1063.5
NC_015275:1223088:123956912395691240015447Clostridium lentocellum DSM 5427 chromosome, complete genomeribosomal protein L95e-1063.2
NC_014394:2111985:213132621313262131775450Gallionella capsiferriformans ES-2 chromosome, complete genome50S ribosomal protein L95e-1063.5
NC_016111:3308310:331714833171483317594447Streptomyces cattleya NRRL 8057, complete genome50S ribosomal protein L96e-1063.2
NC_018145:104303:119063119063119692630Zymomonas mobilis subsp. mobilis ATCC 29191 chromosome, complete50S ribosomal protein L99e-1062.4
NC_013355:105500:120193120193120822630Zymomonas mobilis subsp. mobilis NCIB 11163, complete genomeribosomal protein L99e-1062.4
NC_011963:1482042:150683315068331507402570Rhodobacter sphaeroides KD131 chromosome 1, complete sequence50S ribosomal protein L91e-0962
NC_014638:321382:338988338988339434447Bifidobacterium bifidum PRL2010 chromosome, complete genome50S ribosomal protein L91e-0961.6
NC_011244:94756:123058123058123552495Borrelia recurrentis A1, complete genome50S ribosomal protein L97e-0959.3
NC_014363:8228:300953009530616522Olsenella uli DSM 7084 chromosome, complete genomeLSU ribosomal protein L9P1e-0858.5
NC_013364:5083949:510686451068645107313450Escherichia coli O111:H- str. 11128, complete genome50S ribosomal protein L91e-0858.5
NC_012526:4462:109641096411404441Deinococcus deserti VCD115, complete genomeputative 50S ribosomal protein L91e-0858.9
NC_002758:16000:202932029320739447Staphylococcus aureus subsp. aureus Mu50, complete genome50S ribosomal protein L92e-0858.2
NC_010079:15441:203092030920755447Staphylococcus aureus subsp. aureus USA300_TCH1516, completeribosomal protein L92e-0858.2
NC_009782:16000:202932029320739447Staphylococcus aureus subsp. aureus Mu3, complete genome50S ribosomal protein L92e-0858.2
NC_002953:15416:202862028620732447Staphylococcus aureus subsp. aureus MSSA476, complete genome50S ribosomal protein L92e-0858.2
NC_003923:15416:202862028620732447Staphylococcus aureus subsp. aureus MW2, complete genome50S ribosomal protein L92e-0858.2
NC_002745:16000:202922029220738447Staphylococcus aureus subsp. aureus N315, complete genome50S ribosomal protein L92e-0858.2
NC_002952:15405:202742027420720447Staphylococcus aureus subsp. aureus MRSA252, complete genome50S ribosomal protein L92e-0858.2
NC_007793:15441:203092030920755447Staphylococcus aureus subsp. aureus USA300, complete genome50S ribosomal protein L92e-0858.2
NC_007622:16000:202682026820714447Staphylococcus aureus RF122, complete genome50S ribosomal protein L92e-0858.2
NC_016941:14658:202262022620672447Staphylococcus aureus subsp. aureus MSHR1132, complete genome50S ribosomal protein L92e-0858.2
NC_002951:15441:203092030920755447Staphylococcus aureus subsp. aureus COL, complete genomeribosomal protein L92e-0858.2
NC_009487:16169:203472034720793447Staphylococcus aureus subsp. aureus JH9 chromosome, complete50S ribosomal protein L92e-0858.2
NC_009632:16238:204162041620862447Staphylococcus aureus subsp. aureus JH1 chromosome, complete50S ribosomal protein L92e-0858.2
NC_017347:16000:202732027320719447Staphylococcus aureus subsp. aureus T0131 chromosome, complete50S ribosomal protein L92e-0858.2
NC_017343:16000:202922029220738447Staphylococcus aureus subsp. aureus ECT-R 2, complete genome50S ribosomal protein L92e-0858.2
NC_017342:483359:499717499717500163447Staphylococcus aureus subsp. aureus TCH60 chromosome, complete50S ribosomal protein L92e-0858.2
NC_017341:14970:197581975820204447Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,50S ribosomal protein L92e-0858.2
NC_017338:14886:197561975620202447Staphylococcus aureus subsp. aureus JKD6159 chromosome, complete50S ribosomal protein L92e-0858.2
NC_017337:16000:202862028620732447Staphylococcus aureus subsp. aureus ED133 chromosome, complete50S ribosomal protein L92e-0858.2
NC_016928:16869:210472104721493447Staphylococcus aureus subsp. aureus M013 chromosome, complete50S ribosomal protein L92e-0858.2
NC_013450:16000:202922029220738447Staphylococcus aureus subsp. aureus ED98, complete genome50S ribosomal protein L92e-0858.2
NC_009641:15421:202892028920735447Staphylococcus aureus subsp. aureus str. Newman chromosome,50S ribosomal protein L92e-0858.2
NC_017351:15413:202832028320729447Staphylococcus aureus subsp. aureus 11819-97 chromosome, complete50S ribosomal protein L92e-0858.2
NC_012214:594667:602417602417602869453Erwinia pyrifoliae Ep1/96, complete genome50S ribosomal protein L94e-0857
NC_012814:1757753:175775317577531758199447Bifidobacterium animalis subsp. lactis Bl-04, complete genome50S ribosomal protein L96e-0856.6
NC_016912:15414:202822028220734453Staphylococcus aureus subsp. aureus VC40 chromosome, complete50S ribosomal protein L96e-0856.6
NC_007795:15414:202822028220734453Staphylococcus aureus subsp. aureus NCTC 8325, complete genomeribosomal protein L96e-0856.6
NC_016947:70210:764097640976867459Mycobacterium intracellulare MOTT-02 chromosome, complete genome50S ribosomal protein L97e-0856.2
NC_017219:275476:282065282065282511447Bifidobacterium longum subsp. infantis ATCC 15697, complete genome50S ribosomal protein L97e-0856.2
NC_014909:86000:973699736997866498Candidatus Blochmannia vafer str. BVAF chromosome, complete genome50S ribosomal protein L94e-0753.5
NC_010981:712843:720131720131720685555Wolbachia pipientis, complete genomeribosomal protein L95e-0753.5
NC_006833:637964:654236654236654796561Wolbachia endosymbiont strain TRS of Brugia malayi, completeRibosomal protein L96e-0753.1
NC_015722:4539:453945395060522Candidatus Midichloria mitochondrii IricVA chromosome, complete50S ribosomal protein L96e-0649.7
NC_012997:541648:565485565485565934450Teredinibacter turnerae T7901, complete genomeribosomal protein L97e-0649.7