Pre_GI: BLASTP Hits

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Query: NC_014328:2990790:2993767 Clostridium ljungdahlii ATCC 49587 chromosome, complete genome

Start: 2993767, End: 2995128, Length: 1362

Host Lineage: Clostridium ljungdahlii; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain was isolated from chicken yard waste and is studied for its ability to produce ethanol. This acetogenic species has the ability to convert carbon monoxide into ethanol. The yield of this process has been increased substantially in the laboratory by using a dual-fermentation system. A methanogenic conversion step has also been designed for utilizing some of the waste products generated during the synthetic process.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014376:1879000:1891482189148218928281347Clostridium saccharolyticum WM1 chromosome, complete genomeMATE efflux family protein2e-98359
NC_014976:684000:6901346901346914771344Bacillus subtilis BSn5 chromosome, complete genomeNa+-driven multidrug efflux pump9e-85314
NC_019908:1296870:1298452129845212998071356Brachyspira pilosicoli P43/6/78 chromosome, complete genomecation efflux protein3e-74279
NC_014330:1957725:1969110196911019704651356Brachyspira pilosicoli 95/1000 chromosome, complete genomecation efflux protein6e-74278
NC_017243:3093393:3108831310883131102281398Brachyspira intermedia PWS/A chromosome, complete genomeNorM, Na+-driven multidrug efflux pump2e-63243
NC_012225:2247796:2247796224779622491931398Brachyspira hyodysenteriae WA1, complete genomeNorM, Na+-driven multidrug efflux pump2e-59230
NC_015577:3589884:3620176362017636214981323Treponema azotonutricium ZAS-9 chromosome, complete genomeNa+ driven multidrug efflux pump1e-45184
NC_015311:2626850:2644735264473526461741440Prevotella denticola F0289 chromosome, complete genomeMATE domain-containing protein3e-45182
NC_002950:879930:8843068843068856641359Porphyromonas gingivalis W83, complete genomeMATE efflux family protein8e-44178
NC_002950:1511955:1529998152999815313171320Porphyromonas gingivalis W83, complete genomeMATE efflux family protein3e-43176
NC_019968:1084288:1104070110407011054221353Prevotella dentalis DSM 3688 chromosome 2, complete sequenceputative efflux protein, MATE family1e-42174
NC_003552:2502689:2544485254448525458911407Methanosarcina acetivorans C2A, complete genomeDNA damage-inducible protein4e-42172
NC_016048:2907702:3001860300186030032481389Oscillibacter valericigenes Sjm18-20, complete genomeMatE efflux family protein9e-39161
NC_014624:1349950:1367564136756413689161353Eubacterium limosum KIST612 chromosome, complete genomeNa+ driven multidrug efflux pump3e-38160
NC_014033:1564733:1578215157821515795761362Prevotella ruminicola 23 chromosome, complete genomeputative MATE efflux protein2e-34147
NC_015500:484984:5071955071955087481554Treponema brennaborense DSM 12168 chromosome, complete genomeMATE efflux family protein5e-33142
NC_016633:2239413:2255109225510922564791371Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomeputative efflux protein, MATE family5e-32139
NC_021184:3841172:3866836386683638682031368Desulfotomaculum gibsoniae DSM 7213, complete genomeputative efflux protein, MATE family2e-30134
NC_015577:676453:6764536764536778891437Treponema azotonutricium ZAS-9 chromosome, complete genomeMATE efflux family protein1e-29131
NC_003366:1013773:1013773101377310151281356Clostridium perfringens str. 13, complete genomehypothetical protein4e-29129
NC_016048:1438721:1466945146694514683001356Oscillibacter valericigenes Sjm18-20, complete genomeMatE efflux family protein1e-27124
NC_003413:694475:7112757112757126601386Pyrococcus furiosus DSM 3638, complete genomehypothetical protein2e-27123
NC_015164:2111426:2116408211640821177631356Bacteroides salanitronis DSM 18170 chromosome, complete genomeMATE efflux family protein3e-27123
NC_015977:3011177:3018057301805730194181362Roseburia hominis A2-183 chromosome, complete genomehypothetical protein2e-26120
NC_015578:1430112:1435667143566714371271461Treponema primitia ZAS-2 chromosome, complete genomeMATE efflux family protein3e-26120
NC_015275:3243689:3243689324368932450681380Clostridium lentocellum DSM 5427 chromosome, complete genomeMATE efflux family protein2e-25117
NC_009615:1354122:1371319137131913726681350Parabacteroides distasonis ATCC 8503 chromosome, complete genomeNa+-driven multidrug efflux pump2e-25117
NC_009718:799431:8056918056918070551365Fervidobacterium nodosum Rt17-B1, complete genomeMATE efflux family protein4e-25116
NC_015275:566000:5771625771625785261365Clostridium lentocellum DSM 5427 chromosome, complete genomeMATE efflux family protein1e-24114
NC_015275:3761889:3765361376536137667611401Clostridium lentocellum DSM 5427 chromosome, complete genomeMATE efflux family protein1e-24114
NC_013517:1916020:1936256193625619376231368Sebaldella termitidis ATCC 33386, complete genomeMATE efflux family protein2e-24114
NC_017218:1166844:1176145117614511775271383Bifidobacterium breve ACS-071-V-Sch8b chromosome, complete genomeMATE efflux family protein5e-24112
NC_017219:1830353:1839642183964218410241383Bifidobacterium longum subsp. infantis ATCC 15697, complete genomehypothetical protein3e-23110
NC_011593:1830500:1839852183985218412341383Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,MATE efflux family protein3e-23110
NC_018604:838932:8409738409738423671395Brachyspira pilosicoli WesB complete genomeMATE efflux family protein3e-23110
NC_019978:922978:9229789229789243481371Halobacteroides halobius DSM 5150, complete genomeputative efflux protein, MATE family8e-23108
NC_016894:3935161:3952042395204239535081467Acetobacterium woodii DSM 1030 chromosome, complete genomeNa+ driven multidrug efflux pump6e-23108
NC_013517:2815482:2816247281624728176141368Sebaldella termitidis ATCC 33386, complete genomeMATE efflux family protein1e-22107
NC_015589:2100175:2125207212520721265981392Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeMATE efflux family protein1e-22107
NC_009089:478328:5152855152855166371353Clostridium difficile 630, complete genomeputative drug/sodium antiporter9e-22105
NC_015676:1736375:1740095174009517414411347Methanosalsum zhilinae DSM 4017 chromosome, complete genomeMATE efflux family protein1e-21104
NC_007681:600187:6068146068146082051392Methanosphaera stadtmanae DSM 3091, complete genomepredicted Na+-driven multidrug efflux pump3e-21103
NC_015578:2727684:2731914273191427332871374Treponema primitia ZAS-2 chromosome, complete genomeMATE efflux family protein6e-21102
NC_015913:1248000:1248226124822612495601335Candidatus Arthromitus sp. SFB-mouse-Japan, complete genomeMATE efflux family protein1e-20101
NC_014836:2581939:2602086260208626034381353Desulfurispirillum indicum S5 chromosome, complete genomemulti antimicrobial extrusion protein MatE1e-20101
NC_015737:1385585:1406049140604914074491401Clostridium sp. SY8519, complete genomehypothetical protein7e-2099
NC_015275:882022:8923408923408937281389Clostridium lentocellum DSM 5427 chromosome, complete genomeMATE efflux family protein7e-2099
NC_010001:473354:4861044861044874591356Clostridium phytofermentans ISDg, complete genomeMATE efflux family protein5e-1995.9
NC_014624:287500:2966892966892980411353Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein6e-1995.9
NC_015500:1236874:1238707123870712400561350Treponema brennaborense DSM 12168 chromosome, complete genomeMATE efflux family protein8e-1892
NC_018604:1534074:1536820153682015381991380Brachyspira pilosicoli WesB complete genomeputative Na+ driven multidrug efflux pump1e-1791.3
NC_014150:1123570:1139204113920411405081305Brachyspira murdochii DSM 12563 chromosome, complete genomemulti antimicrobial extrusion protein MatE2e-1790.5
NC_010162:7571525:7589605758960575909691365Sorangium cellulosum 'So ce 56', complete genomehypothetical protein3e-1790.1
NC_005139:2731623:2732619273261927339531335Vibrio vulnificus YJ016 chromosome I, complete sequenceNa+-driven multidrug efflux pump3e-1789.7
NC_015977:2189115:2206567220656722079341368Roseburia hominis A2-183 chromosome, complete genomehypothetical protein6e-1789.4
NC_014965:670115:6874306874306887611332Vibrio vulnificus MO6-24/O chromosome I, complete sequencemulti antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps7e-1789
NC_004459:1679335:1696608169660816979391332Vibrio vulnificus CMCP6 chromosome I, complete sequenceNa+-driven multidrug efflux pump7e-1789
NC_017095:269165:2844172844172858351419Fervidobacterium pennivorans DSM 9078 chromosome, complete genomeputative efflux protein, MATE family7e-1789
NC_015519:197836:2352942352942366761383Tepidanaerobacter sp. Re1 chromosome, complete genomeMATE efflux family protein9e-1685.1
NC_020156:1220755:1220755122075512221221368Nonlabens dokdonensis DSW-6, complete genomeputative Na+-driven multidrug efflux pump, MatE family1e-1584.7
NC_007759:2146254:2161721216172121630821362Syntrophus aciditrophicus SB, complete genomeNa+ driven multidrug efflux pump1e-1584.7
NC_015500:159199:1734071734071747291323Treponema brennaborense DSM 12168 chromosome, complete genomemulti antimicrobial extrusion protein MatE3e-1583.6
NC_014408:682689:6856696856696870211353Methanothermobacter marburgensis str. Marburg chromosome, completeNa+-driven multidrug efflux pump4e-1583.2
NC_007796:2286713:2289246228924622906131368Methanospirillum hungatei JF-1, complete genomeMATE efflux family protein4e-1583.2
NC_008577:3485878:3502723350272335040751353Shewanella sp. ANA-3 chromosome 1, complete sequencemulti antimicrobial extrusion protein MatE7e-1582.4
NC_012780:284336:2876082876082889481341Eubacterium eligens ATCC 27750 plasmid unnamed, complete sequencemultidrug resistance protein, MATE family8e-1582
NC_018643:641360:6576496576496590191371Alpha proteobacterium HIMB5 chromosome, complete genomeefflux protein, MATE family9e-1581.6
NC_017095:1461520:1477155147715514785011347Fervidobacterium pennivorans DSM 9078 chromosome, complete genomeputative efflux protein, MATE family1e-1481.3
NC_003366:1013773:1027186102718610285021317Clostridium perfringens str. 13, complete genomehypothetical protein1e-1481.3
NC_013887:1424000:1438429143842914397871359Methanocaldococcus sp. FS406-22 chromosome, complete genomeMATE efflux family protein6e-1479.3
NC_014624:2569604:2569604256960425709261323Eubacterium limosum KIST612 chromosome, complete genomeMATE efflux family protein8e-1479
NC_017378:1175639:1182468118246811838471380Helicobacter pylori Puno120 chromosome, complete genomehypothetical protein1e-1378.2
NC_009698:2171151:2193841219384121951421302Clostridium botulinum A str. Hall chromosome, complete genomeMATE efflux family protein1e-1377.8
NC_016048:2907702:3015513301551330168471335Oscillibacter valericigenes Sjm18-20, complete genomeMatE efflux family protein2e-1377.4
NC_015416:2292555:2311041231104123124351395Methanosaeta concilii GP-6 chromosome, complete genomeMATE efflux family protein2e-1377.4
NC_015954:2405527:2424324242432424257211398Halophilic archaeon DL31 chromosome, complete genomeMATE efflux family protein2e-1377
NC_013895:1332832:1339746133974613409031158Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completeiron dependent repressor, N-terminal DNA binding domain protein4e-1376.6
NC_013316:2033906:2077802207780220791031302Clostridium difficile R20291, complete genomehypothetical protein5e-1375.9
NC_014377:480158:5245855245855259761392Thermosediminibacter oceani DSM 16646 chromosome, complete genomeMATE efflux family protein8e-1375.5
NC_010673:479552:4979074979074992531347Borrelia hermsii DAH, complete genomeNa+ driven multidrug efflux pump7e-1375.5
NC_017238:482222:4950084950084963721365Borrelia afzelii PKo chromosome, complete genomeMATE efflux family protein1e-1274.7
NC_008277:485299:4964494964494978131365Borrelia afzelii PKo, complete genomehypothetical protein1e-1274.7
NC_016631:2112175:2113886211388621153041419Granulicella mallensis MP5ACTX8 chromosome, complete genomeMATE efflux family protein2e-1274.3
NC_014364:394899:4293224293224306801359Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeMATE efflux family protein3e-1273.6
NC_010184:3213347:3220826322082632222441419Bacillus weihenstephanensis KBAB4, complete genomemulti antimicrobial extrusion protein MatE3e-1273.6
NC_011333:1236730:1237907123790712392861380Helicobacter pylori G27 chromosome, complete genomehypothetical protein3e-1273.2
NC_011244:497212:5126435126435140011359Borrelia recurrentis A1, complete genomehypothetical protein4e-1273.2
NC_015921:481532:4914454914454928091365Borrelia bissettii DN127 chromosome, complete genomeMATE efflux family protein4e-1273.2
NC_017379:1233482:1240315124031512416941380Helicobacter pylori Puno135 chromosome, complete genomehypothetical protein5e-1272.8
NC_006156:484951:4949224949224962801359Borrelia garinii PBi chromosome linear, complete sequencehypothetical protein4e-1272.8
NC_010516:2064027:2081583208158320829051323Clostridium botulinum B1 str. Okra, complete genomeMATE efflux family protein9e-1272
NC_009699:2116500:2131651213165121329731323Clostridium botulinum F str. Langeland chromosome, complete genomeMATE efflux family protein9e-1272
NC_017297:2114222:2131755213175521330771323Clostridium botulinum F str. 230613 chromosome, complete genomeMATE efflux family protein9e-1272
NC_020291:397696:4002504002504016321383Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeMATE efflux family protein8e-1272
NC_012563:2203037:2219890221989022212121323Clostridium botulinum A2 str. Kyoto, complete genomeMATE efflux family protein8e-1272
NC_009495:2056546:2073399207339920747211323Clostridium botulinum A str. ATCC 3502 chromosome, complete genomedrug/sodium antiporter8e-1272
NC_009697:1985187:2002040200204020033621323Clostridium botulinum A str. ATCC 19397 chromosome, completeMATE efflux family protein8e-1272
NC_009698:1985404:2002257200225720035791323Clostridium botulinum A str. Hall chromosome, complete genomeMATE efflux family protein8e-1272
NC_009052:4335754:4335754433575443371211368Shewanella baltica OS155, complete genomeMATE efflux family protein7e-1272
NC_014376:1217000:1251727125172712530641338Clostridium saccharolyticum WM1 chromosome, complete genomemulti antimicrobial extrusion protein MatE1e-1171.6
NC_010520:2171584:2191093219109321924151323Clostridium botulinum A3 str. Loch Maree, complete genomeMATE efflux family protein2e-1170.9
NC_001318:479709:4925884925884939521365Borrelia burgdorferi B31, complete genomehypothetical protein2e-1170.9
NC_011728:477439:4886834886834900471365Borrelia burgdorferi ZS7, complete genomehypothetical protein2e-1170.9
NC_009092:521519:5275115275115288781368Shewanella loihica PV-4, complete genomeMATE efflux family protein3e-1170.1
NC_010611:3771778:3791682379168237930491368Acinetobacter baumannii ACICU, complete genomeNa+-driven multidrug efflux pump4e-1169.7
NC_016642:3554000:3580285358028535816911407Pseudovibrio sp. FO-BEG1 chromosome, complete genomeMulti antimicrobial extrusion protein MatE4e-1169.7
NC_009792:859228:8577928577928592311440Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein6e-1169.3
NC_020181:473170:4717344717344731731440Enterobacter aerogenes EA1509E, complete genomewidely conserved hypothetical transmembrane protein with duf0136e-1169.3
NC_004347:718091:7190847190847204421359Shewanella oneidensis MR-1, complete genomeMATE efflux family protein7e-1168.9
NC_010506:5195000:5215531521553152168861356Shewanella woodyi ATCC 51908, complete genomeMATE efflux family protein9e-1168.6
NC_008710:488815:4953954953954967831389Borrelia turicatae 91E135, complete genomeNa+ driven multidrug efflux pump9e-1168.6
NC_013171:342714:3427143427143440691356Anaerococcus prevotii DSM 20548, complete genomeMATE efflux family protein9e-1168.6
NC_011753:206178:2316862316862331161431Vibrio splendidus LGP32 chromosome 1, complete genomeMultidrug efflux pump protein1e-1068.2
NC_014732:141000:1419871419871434591473Halogeometricum borinquense DSM 11551 plasmid pHBOR04, completeefflux protein, MATE family2e-1067.4
NC_019908:1043401:1061875106187510632151341Brachyspira pilosicoli P43/6/78 chromosome, complete genomeNa+-driven multidrug efflux pump6e-1065.9
NC_019962:1750497:1763099176309917645831485Natrinema pellirubrum DSM 15624, complete genomeputative efflux protein, MATE family6e-1065.9
NC_018607:1865972:1882524188252418838641341Brachyspira pilosicoli B2904 chromosome, complete genomeNa+-driven multidrug efflux pump1e-0965.1
NC_008700:3692333:3706716370671637080831368Shewanella amazonensis SB2B, complete genomeMATE efflux family protein2e-0964.3
NC_014614:356746:3623293623293636961368Clostridium sticklandii, complete genomeMATE efflux family protein3e-0963.5
NC_009615:1601170:1601170160117016025491380Parabacteroides distasonis ATCC 8503 chromosome, complete genometransmembrane cation efflux pump6e-0962.4
NC_015275:4493500:4510265451026545116321368Clostridium lentocellum DSM 5427 chromosome, complete genomeMATE efflux family protein7e-0962.4
NC_013967:1687825:1691338169133816928041467Haloferax volcanii DS2 chromosome, complete genomemulti antimicrobial extrusion family drug/sodium antiporter7e-0962.4
NC_008609:2840249:2853862285386228552651404Pelobacter propionicus DSM 2379, complete genomeMATE efflux family protein7e-0962.4
NC_012781:1968827:2001437200143720027981362Eubacterium rectale ATCC 33656, complete genomehypothetical protein7e-0962.4
NC_009052:2512373:2512933251293325145731641Shewanella baltica OS155, complete genomemulti antimicrobial extrusion protein MatE8e-0962
NC_009667:1076718:1090708109070810921921485Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequenceMATE efflux family protein8e-0962
NC_008322:641197:6422776422776436351359Shewanella sp. MR-7, complete genomeMATE efflux family protein1e-0861.6
NC_014376:4369666:437554543755454375994450Clostridium saccharolyticum WM1 chromosome, complete genome1e-0861.6
NC_014541:475350:5317815317815331271347Ferrimonas balearica DSM 9799 chromosome, complete genomeMATE efflux family protein2e-0860.8
NC_019962:1676632:1699026169902617005071482Natrinema pellirubrum DSM 15624, complete genomeputative efflux protein, MATE family2e-0860.8
NC_014328:2467239:2470621247062124719821362Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative Na+-driven multidrug efflux pump3e-0860.5
NC_014364:4488875:4526948452694845283091362Spirochaeta smaragdinae DSM 11293 chromosome, complete genomemulti antimicrobial extrusion protein MatE5e-0859.3
NC_010718:2492895:2509927250992725113301404Natranaerobius thermophilus JW/NM-WN-LF, complete genomeMATE efflux family protein1e-0758.2
NC_015152:1341353:1347180134718013485201341Spirochaeta sp. Buddy chromosome, complete genomeMATE efflux family protein1e-0758.2
NC_016901:2661971:2678351267835126799761626Shewanella baltica OS678 chromosome, complete genomemulti antimicrobial extrusion protein MatE3e-0757
NC_013174:73948:9487594875964431569Jonesia denitrificans DSM 20603, complete genomeMATE efflux family protein5e-0756.2
NC_014364:773500:7875177875177888571341Spirochaeta smaragdinae DSM 11293 chromosome, complete genomemulti antimicrobial extrusion protein MatE4e-0756.2
UCMB5137:1676568:1692258169225816936101353Bacillus atrophaeus UCMB-5137damage inducible, Na+ driven multidrug efflux pump7e-0755.8
NC_014219:2976642:2994760299476029961001341Bacillus selenitireducens MLS10 chromosome, complete genomeMATE efflux family protein2e-0654.7
NC_013923:45876:6275562755642571503Natrialba magadii ATCC 43099 plasmid pNMAG01, complete sequenceMATE efflux family protein2e-0654.3
NC_019962:2129393:2151904215190421533881485Natrinema pellirubrum DSM 15624, complete genomeputative efflux protein, MATE family3e-0653.5
NC_015954:2405527:2405527240552724069781452Halophilic archaeon DL31 chromosome, complete genomeMATE efflux family protein4e-0653.1
NC_013656:2382000:2396307239630723975091203Lactococcus lactis subsp. lactis KF147, complete genomeNa+ driven multidrug efflux pump4e-0653.1
NC_012029:1525929:1548376154837615500401665Halorubrum lacusprofundi ATCC 49239 chromosome 1, complete genomeMATE efflux family protein6e-0652.8