Pre_GI: BLASTP Hits

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Query: NC_014323:245979:250336 Herbaspirillum seropedicae SmR1 chromosome, complete genome

Start: 250336, End: 251085, Length: 750

Host Lineage: Herbaspirillum seropedicae; Herbaspirillum; Oxalobacteraceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Root-associated nitrogen-fixing bacterium. Herbaspirillum seropedicae is an endophitic nitrogen-fixing beta-Proteobacteria found associated with important crops such as sugarcane, wheat, maize, rice and sorghum. It is non-phytopathogenic and produces interesting biotechnological products such as polybetaalkanoates and cyanophycin. Herbaspirillum seropedicae was isolated from the roots of rice plants, and is member of a group of free-living soil bacteria known to promote plant growth. The yields of rice and sorghum were significantly increased when grown in soil inoculated with Herbaspirillum seropedicae.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016894:3329562:333153633315363332213678Acetobacterium woodii DSM 1030 chromosome, complete genomeGntR family transcriptional regulator5e-0651.6
NC_015064:1355065:137103413710341371891858Acidobacterium sp. MP5ACTX9 chromosome, complete genomeGntR domain protein9e-1270.5
NC_015057:30743:366533665337351699Acidobacterium sp. MP5ACTX9 plasmid pACIX901, complete sequencetranscriptional regulator, GntR family9e-0857.4
NC_016513:1761830:177384217738421774597756Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completeD-mannonate oxidoreductase1e-22106
NC_013416:1429881:143955414395541440309756Aggregatibacter actinomycetemcomitans D11S-1, complete genomeD-mannonate oxidoreductase1e-22106
NC_003305:1743939:177186217718621772575714Agrobacterium tumefaciens str. C58 chromosome linear, completetranscriptional regulator, GntR family6e-0651.2
NC_009922:315870:338735338735339421687Alkaliphilus oremlandii OhILAs, complete genometranscriptional regulator, GntR family7e-0961.2
NC_017192:1063955:106930610693061069989684Arcobacter sp. L, complete genomeputative transcriptional regulator7e-0961.2
NC_015145:3236445:327180532718053272530726Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genometranscriptional regulator6e-0651.2
NC_015145:3657103:367579336757933676560768Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genometranscriptional regulator2e-0653.1
NC_008541:2119883:213794521379452138670726Arthrobacter sp. FB24 chromosome 1, complete sequenceGntR domain protein2e-0962.8
NC_007530:4400152:441123244112324411876645Bacillus anthracis str. 'Ames Ancestor', complete genometranscriptional regulator, gntr family7e-1064.3
NC_012659:4399094:441113244111324411776645Bacillus anthracis str. A0248, complete genomeGntR family transcriptional regulator7e-1064.3
NC_003997:4399067:441110544111054411749645Bacillus anthracis str. Ames, complete genometranscriptional regulator, GntR family7e-1064.3
NC_005945:4399756:441179444117944412438645Bacillus anthracis str. Sterne, complete genometranscriptional regulator, GntR family7e-1064.3
NC_012472:4400420:440866344086634409307645Bacillus cereus 03BB102, complete genometranscriptional regulator, GntR family7e-1064.3
NC_011658:4379274:438888943888894389533645Bacillus cereus AH187 chromosome, complete genomeGntR family transcriptional regulator7e-1064.3
NC_011773:4461758:447283844728384473482645Bacillus cereus AH820 chromosome, complete genomeGntR family transcriptional regulator7e-1064.3
NC_014335:4327584:433961243396124340256645Bacillus cereus biovar anthracis str. CI chromosome, completeGntR family transcriptional regulator7e-1064.3
NC_006274:4448293:445951244595124460156645Bacillus cereus E33L, complete genometranscriptional regulator, GntR family7e-1064.3
NC_016779:4361140:437332243733224373909588Bacillus cereus F837/76 chromosome, complete genomeGntR family transcriptional regulator6e-0651.2
NC_016771:4333000:434267243426724343316645Bacillus cereus NC7401, complete genomeGntR family transcriptional regulator7e-1064.3
NC_016023:755237:755237755237755947711Bacillus coagulans 36D1 chromosome, complete genomeGntR domain-containing protein7e-0857.8
NC_009674:3344000:335662333566233357240618Bacillus cytotoxicus NVH 391-98 chromosome, complete genomeregulatory protein GntR HTH6e-1064.7
NC_021171:4549673:455230045523004552956657Bacillus sp. 1NLA3E, complete genomeGntR family transcriptional regulator7e-1684.3
NC_014479:2505823:252667125266712527399729Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeGntR family transcriptional regulator8e-1994
NC_014171:4447856:445992144599214460565645Bacillus thuringiensis BMB171 chromosome, complete genomeGntR family transcriptional regulator8e-1064.3
NC_017200:4401945:441506644150664415710645Bacillus thuringiensis serovar finitimus YBT-020 chromosome,GntR family transcriptional regulator8e-1064.3
NC_017200:3622838:364600236460023646727726Bacillus thuringiensis serovar finitimus YBT-020 chromosome,GntR family transcriptional regulator9e-0754.3
NC_014098:2971011:297882229788222979547726Bacillus tusciae DSM 2912 chromosome, complete genometranscriptional regulator, GntR family4e-0652
NC_014098:2332938:234278423427842343536753Bacillus tusciae DSM 2912 chromosome, complete genometranscriptional regulator, GntR family5e-0858.2
NC_010184:4425676:443665044366504437294645Bacillus weihenstephanensis KBAB4, complete genomeregulatory protein GntR HTH6e-0961.2
NC_015376:1185000:118696811869681187711744Burkholderia gladioli BSR3 chromosome chromosome 2, completeGntR-like protein2e-2099.4
NC_010676:304405:323839323839324528690Burkholderia phytofirmans PsJN chromosome 2, complete sequenceGntR domain protein3e-1272.4
NC_010676:897801:899693899693900427735Burkholderia phytofirmans PsJN chromosome 2, complete sequencetranscriptional regulator, GntR family9e-0753.9
NC_010676:2720068:273288227328822733655774Burkholderia phytofirmans PsJN chromosome 2, complete sequenceGntR domain protein7e-1064.3
NC_014118:1528851:152885115288511529540690Burkholderia sp. CCGE1002 chromosome chromosome 2, completeregulatory protein GntR HTH5e-1168.2
NC_007952:1293024:129591312959131296710798Burkholderia xenovorans LB400 chromosome 2, complete sequenceTranscriptional regulator, GntR family6e-0754.7
NC_007953:811500:823033823033823689657Burkholderia xenovorans LB400 chromosome 3, complete sequenceTranscriptional regulator, GntR family1e-0860.1
NC_015167:313506:317055317055317759705Cellulophaga lytica DSM 7489 chromosome, complete genomeGntR domain-containing protein2e-0962.8
NC_011831:1336779:134177413417741342454681Chloroflexus aggregans DSM 9485, complete genomeregulatory protein GntR HTH4e-0858.5
NC_007963:1190847:121570212157021216370669Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, GntR family6e-0857.8
NC_007963:3553678:356654835665483567216669Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, GntR family1e-0756.6
NC_013716:5020204:504139450413945042170777Citrobacter rodentium ICC168, complete genomeexu regulon transcriptional regulator4e-1995.1
NC_015687:2632557:265543326554332656128696Clostridium acetobutylicum DSM 1731 chromosome, complete genomeFadR family transcriptional regulator6e-1684.7
NC_011898:1558208:156763615676361568325690Clostridium cellulolyticum H10, complete genomeGntR domain protein2e-1273.2
NC_015856:268034:293167293167293937771Collimonas fungivorans Ter331 chromosome, complete genomeputative D-glucarate or D-galactorate regulator, GntR family8e-1167.4
NC_015856:3536441:356124535612453561940696Collimonas fungivorans Ter331 chromosome, complete genomeregulatory protein GntR3e-0652.4
NC_013446:2655955:266091026609102661545636Comamonas testosteroni CNB-2, complete genometranscriptional regulator, GntR family3e-0962
NC_012590:637651:662143662143662859717Corynebacterium aurimucosum ATCC 700975, complete genometranscriptional regulator, ExuR family1e-0653.9
NC_013939:1625491:163812216381221638790669Deferribacter desulfuricans SSM1, complete genomeGntR family transcriptional regulator3e-0755.8
NC_010002:3357752:337233533723353373021687Delftia acidovorans SPH-1, complete genometranscriptional regulator, GntR family1e-0653.5
NC_013223:1090397:111498711149871115835849Desulfohalobium retbaense DSM 5692, complete genomeGntR domain protein6e-0651.2
NC_013173:2261396:226881722688172269518702Desulfomicrobium baculatum DSM 4028, complete genomeGntR domain protein6e-1477.8
NC_018515:937994:937994937994938674681Desulfosporosinus meridiei DSM 13257 chromosome, complete genometranscriptional regulator1e-0653.9
NC_007519:1244198:125890712589071259602696Desulfovibrio alaskensis G20 chromosome, complete genomeGntR family transcriptional regulator3e-1272.4
NC_012880:1091486:111621711162171116951735Dickeya dadantii Ech703, complete genomeGntR domain protein4e-2098.6
NC_012912:844339:850632850632851399768Dickeya zeae Ech1591, complete genomeGntR domain protein2e-23109
NC_008253:4817864:485861648586164859389774Escherichia coli 536, complete genomeuxu operon transcriptional regulator9e-2097.1
NC_012759:3648500:366540336654033666179777Escherichia coli BW2952 chromosome, complete genomeDNA-binding transcriptional repressor LldR5e-1478.2
NC_011745:5114500:513677251367725137545774Escherichia coli ED1a chromosome, complete genomeDNA-binding transcriptional repressor UxuR9e-2097.1
NC_011745:4862218:487607548760754876809735Escherichia coli ED1a chromosome, complete genomeTranscriptional regulator1e-0860.5
NC_011751:3453683:349481534948153495549735Escherichia coli UMN026 chromosome, complete genometranscriptional regulator8e-0960.8
NC_007946:4875997:491812649181264918899774Escherichia coli UTI89, complete genomeUxuR uxu operon transcriptional regulator9e-2097.4
CP002185:4791811:481706548170654817790726Escherichia coli W, complete genomeDNA-binding transcriptional repressor2e-1893.2
NC_011740:2737467:274186427418642742535672Escherichia fergusonii ATCC 35469, complete genomeputative gntR family regulatory protein2e-1583.2
NC_017095:119361:147716147716148471756Fervidobacterium pennivorans DSM 9078 chromosome, complete genometranscriptional regulator5e-0961.6
NC_015656:1876627:188194718819471882705759Frankia symbiont of Datisca glomerata chromosome, complete genomeGntR domain-containing protein5e-1065.1
NC_017033:1089579:110918911091891109923735Frateuria aurantia DSM 6220 chromosome, complete genometranscriptional regulator1e-0963.2
NC_014394:93344:110272110272110943672Gallionella capsiferriformans ES-2 chromosome, complete genometranscriptional regulator, GntR family1e-0653.9
NC_006510:2044347:206127920612792062007729Geobacillus kaustophilus HTA426, complete genometranscriptional regulator6e-1891.3
NC_011365:1865687:188920618892061889964759Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeGntR family transcriptional regulator5e-0651.6
NC_010125:1011430:101791310179131018671759Gluconacetobacter diazotrophicus PAl 5, complete genomeputative transcriptional regulator protein, GntR family3e-0652
NC_014532:2989185:299424429942442994999756Halomonas elongata DSM 2581, complete genomeGntR domain protein4e-1995.1
NC_014532:349384:349384349384350133750Halomonas elongata DSM 2581, complete genometranscriptional regulator, GntR family2e-1066.2
NC_010337:2339056:234209423420942342804711Heliobacterium modesticaldum Ice1, complete genometranscriptional regulator, GntR family5e-1478.2
NC_016612:361417:361417361417362190774Klebsiella oxytoca KCTC 1686 chromosome, complete genomeGntR family transcriptional regulator protein6e-22104
NC_007644:1352794:135436113543611355110750Moorella thermoacetica ATCC 39073, complete genomeregulatory protein GntR, HTH2e-1685.9
NC_008595:2546696:257775925777592578541783Mycobacterium avium 104, complete genomeregulatory protein GntR, HTH1e-0860.5
NC_016947:1311264:133507813350781335860783Mycobacterium intracellulare MOTT-02 chromosome, complete genomeregulatory protein GntR6e-0961.2
NC_016604:3137694:313854031385403139238699Mycobacterium rhodesiae NBB3 chromosome, complete genometranscriptional regulator2e-1685.9
NC_018681:2447871:245134424513442451982639Nocardia brasiliensis ATCC 700358 chromosome, complete genomeGntR family transcriptional regulator8e-0650.8
NC_004193:375416:394239394239394949711Oceanobacillus iheyensis HTE831, complete genometranscriptional regulator3e-1065.9
NC_009667:1341000:136099613609961361676681Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequenceGntR family transcriptional regulator6e-0651.2
NC_016048:3667890:367938436793843680112729Oscillibacter valericigenes Sjm18-20, complete genomeputative GntR family transcriptional regulator3e-1168.9
NC_016935:3819500:382680038268003827531732Paenibacillus mucilaginosus 3016 chromosome, complete genometranscriptional regulator1e-1997.1
NC_015690:3269000:327636032763603277091732Paenibacillus mucilaginosus KNP414 chromosome, complete genometranscriptional regulator9e-2097.1
NC_002663:1988000:198801719880171988724708Pasteurella multocida subsp. multocida str. Pm70, complete genomeGntR4e-0652
NC_015177:915366:934323934323934973651Pedobacter saltans DSM 12145 chromosome, complete genometranscriptional regulator, GntR family8e-0857.4
NC_008027:775896:799660799660800427768Pseudomonas entomophila L48, complete genometranscriptional regulator, GntR family8e-1477.4
NC_015556:4118304:413267941326794133422744Pseudomonas fulva 12-X chromosome, complete genomeGntR domain protein6e-0858.2
NC_009439:3770282:380040438004043801204801Pseudomonas mendocina ymp, complete genomeGntR family transcriptional regulator8e-0754.3
NC_017986:331610:369185369185369934750Pseudomonas putida ND6 chromosome, complete genomeGntR family transcriptional regulator4e-0652
NC_015733:3736104:378283237828323783611780Pseudomonas putida S16 chromosome, complete genomeDNA-binding transcriptional regulator GlcC6e-0754.7
NC_015733:3923800:392690539269053927591687Pseudomonas putida S16 chromosome, complete genomeGntR family transcriptional regulator3e-1685.5
NC_007275:1:149981499815699702Pseudomonas syringae pv. phaseolicola 1448A small plasmid, completetranscriptional regulator, GntR family7e-1064.3
NC_015458:1692401:169240116924011693138738Pusillimonas sp. T7-7 chromosome, complete genomeGntR family transcriptional regulator2e-0859.7
NC_008314:2744553:277746027774602778158699Ralstonia eutropha H16 chromosome 2, complete sequencetranscriptional regulator, GntR-family2e-1686.3
NC_008314:1955793:195959419595941960286693Ralstonia eutropha H16 chromosome 2, complete sequencetranscriptional regulator4e-0652
NC_007974:2097334:213197321319732132776804Ralstonia metallidurans CH34 chromosome 2, complete sequenceregulatory protein GntR, HTH3e-1168.9
NC_007974:2097334:215043921504392151161723Ralstonia metallidurans CH34 chromosome 2, complete sequenceGntR-like protein1e-1376.6
NC_007974:2097334:213104121310412131952912Ralstonia metallidurans CH34 chromosome 2, complete sequenceregulatory protein GntR, HTH8e-0857.8
NC_007974:785216:801188801188802060873Ralstonia metallidurans CH34 chromosome 2, complete sequencetranscriptional regulator, GntR family1e-0653.9
NC_012856:1:147231472315487765Ralstonia pickettii 12D chromosome 1, complete genomeGntR domain protein4e-0755.5
NC_014834:614890:633477633477634205729Rhodopseudomonas palustris DX-1 chromosome, complete genomeGntR family transcriptional regulator3e-1375.5
NC_013501:1337489:134428613442861345053768Rhodothermus marinus DSM 4252, complete genomeGntR domain protein2e-1169.7
NC_008148:1859888:187784118778411878557717Rubrobacter xylanophilus DSM 9941, complete genomeGntR-like protein5e-1271.6
NC_008148:583030:583030583030583788759Rubrobacter xylanophilus DSM 9941, complete genomeGntR-like protein4e-1788.6
NC_007912:1231436:123868412386841239451768Saccharophagus degradans 2-40, complete genome1,4-alpha-glucan branching enzyme1e-24113
NC_015761:4355335:437435443743544375127774Salmonella bongori NCTC 12419, complete genomeuxu operon transcriptional regulator8e-2097.4
NC_015761:1488807:149410414941041494778675Salmonella bongori NCTC 12419, complete genomeregulatory protein6e-1581.3
NC_006905:4638707:466873046687304669503774Salmonella enterica subsp. enterica serovar Choleraesuis strtranscriptional repressor for uxu operon2e-2099.8
NC_011147:4460726:449757144975714498344774Salmonella enterica subsp. enterica serovar Paratyphi A strDNA-binding transcriptional repressor UxuR5e-2098.2
NC_010102:4745949:476664047666404767365726Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein6e-1994.4
NC_012125:4716000:474604547460454746818774Salmonella enterica subsp. enterica serovar Paratyphi C strainDNA-binding transcriptional repressor UxuR3e-2098.6
NC_011094:1584038:158403815840381584709672Salmonella enterica subsp. enterica serovar Schwarzengrund strregulatory protein9e-1580.5
NC_003198:1463253:147775414777541478545792Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative regulatory protein9e-1580.5
NC_004631:4687270:470799047079904708763774Salmonella enterica subsp. enterica serovar Typhi Ty2, completeuxu operon transcriptional regulator5e-2098.2
NC_016860:1614280:161428016142801614951672Salmonella enterica subsp. enterica serovar Typhimurium strputative regulatory protein9e-1580.5
NC_016856:1621279:162656716265671627238672Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative regulatory protein9e-1580.5
NC_003197:1611302:161647016164701617261792Salmonella typhimurium LT2, complete genomeputative regulatory protein9e-1580.5
NC_008321:458811:474586474586475338753Shewanella sp. MR-4, complete genomeregulatory protein GntR, HTH5e-0651.6
NC_007613:4403070:442852244285224429295774Shigella boydii Sb227, complete genomeregulator for uxu operon9e-2097.1
NC_007606:3755155:377484737748473775623777Shigella dysenteriae Sd197, complete genometranscriptional regulator2e-1479.3
NC_017328:3088907:315387331538733154643771Shigella flexneri 2002017 chromosome, complete genomeTranscriptional activator for glc operon1e-0653.5
NC_004337:3590323:375165237516523752428777Shigella flexneri 2a str. 301, complete genometranscriptional regulator5e-1478.2
NC_007712:433500:437760437760438524765Sodalis glossinidius str. 'morsitans', complete genomeputative transcriptional regulator4e-1685.1
NC_015594:332432:349319349319350053735Sphingobium chlorophenolicum L-1 chromosome chromosome 2, completeGntR domain-containing protein2e-1169.3
NC_014364:815346:820369820369821073705Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeGntR domain protein3e-1375.9
NC_013947:1696671:171062117106211711286666Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, GntR family9e-0857.4
NC_016582:10015558:100189221001892210019551630Streptomyces bingchenggensis BCW-1 chromosome, complete genomeGntR family transcriptional regulator6e-0651.2
NC_016582:9664000:967760596776059678303699Streptomyces bingchenggensis BCW-1 chromosome, complete genomeGntR family transcriptional regulator2e-0859.7
NC_015172:1471501:147493214749321475636705Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeregulatory protein GntR HTH5e-0961.6
NC_013526:105195:119507119507120259753Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomeGntR domain protein1e-0860.1
NC_019940:2931500:295856629585662959279714Thioflavicoccus mobilis 8321 chromosome, complete genometranscriptional regulator4e-0652
NC_008786:3045770:3061342306134230624811140Verminephrobacter eiseniae EF01-2, complete genomeGntR domain protein3e-0962.4
NC_014966:1668822:169026116902611691052792Vibrio vulnificus MO6-24/O chromosome II, complete sequencetranscriptional regulator3e-24112
NC_013530:423540:442371442371443075705Xylanimonas cellulosilytica DSM 15894, complete genomeGntR domain protein3e-0858.9
NC_017265:2807302:282906228290622829862801Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,DNA-binding transcriptional repressor5e-22104
NC_005810:1413305:143504514350451435806762Yersinia pestis biovar Microtus str. 91001, complete genomeputative transcriptional regulatory protein5e-22104
NC_017160:1299733:132130713213071322050744Yersinia pestis D182038 chromosome, complete genometranscriptional regulator4e-22104
NC_004088:3186954:320871332087133209513801Yersinia pestis KIM, complete genomeregulator for uxu operon5e-22104
NC_008149:3022970:304472130447213045464744Yersinia pestis Nepal516, complete genometranscriptional regulatory protein4e-22104
NC_009381:2731965:275373427537342754414681Yersinia pestis Pestoides F chromosome, complete genometranscriptional regulatory protein2e-1996.3
NC_009708:3035798:305763230576323058375744Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeuxu operon transcriptional regulator4e-22104
NC_010465:3046904:306868030686803069423744Yersinia pseudotuberculosis YPIII, complete genomeGntR domain protein4e-22104
NC_014041:1084246:110089111008911101589699Zunongwangia profunda SM-A87 chromosome, complete genomeputative GntR family regulatory protein4e-0755.5