Pre_GI: BLASTN Hits

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Query: NC_014169:515957 Bifidobacterium longum subsp. longum JDM301 chromosome, complete

Start: 515957, End: 540148, Length: 24192

Host Lineage: Bifidobacterium longum; Bifidobacterium; Bifidobacteriaceae; Bifidobacteriales; Actinobacteria; Bacteria

General Information: Representatives of this genus naturally colonize the human gastrointestinal tract (GIT) and are important for establishing and maintaining homeostasis of the intestinal ecosystem to allow for normal digestion. Their presence has been associated with beneficial health effects, such as prevention of diarrhea, amelioration of lactose intolerance, or immunomodulation. The stabilizing effect on GIT microflora is attributed to the capacity of bifidobacteria to produce bacteriocins, which are bacteriostatic agents with a broad spectrum of action, and to their pH-reducing activity. Most of the ~30 known species of bifidobacteria have been isolated from the mammalian GIT, and some from the vaginal and oral cavity. All are obligate anaerobes belonging to the Actinomycetales, branch of Gram-positive bacteria with high GC content that also includes Corynebacteria, Mycobacteria, and Streptomycetes. This organism is found in adult humans and formula fed infants as a normal component of gut flora.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_004307:11083251108325114340935085Bifidobacterium longum NCC2705, complete genome08025BLASTN svgBLASTP svg
NC_015067:45962645962649282633201Bifidobacterium longum subsp. longum JCM 1217, complete genome07265BLASTN svgBLASTP svg
NC_015067:998500998500102062722128Bifidobacterium longum subsp. longum JCM 1217, complete genome06599BLASTN svgBLASTP svg
NC_015052:47194447194450736635423Bifidobacterium longum subsp. infantis 157F, complete genome05993BLASTN svgBLASTP svg
NC_013714:22038542203854222231018457Bifidobacterium dentium Bd1, complete genome2e-59238BLASTN svgBLASTP svg
NC_008618:17044621704462172309918638Bifidobacterium adolescentis ATCC 15703, complete genome3e-43184BLASTN svgBLASTP svg
NC_012814:15992411599241165827959039Bifidobacterium animalis subsp. lactis Bl-04, complete genome1e-33153BLASTN svgBLASTP svg
NC_012815:16039161603916165709953184Bifidobacterium animalis subsp. lactis DSM 10140, complete genome3e-1591.7BLASTN svgBLASTP svg