Pre_GI: BLASTP Hits

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Query: NC_014169:703889:717015 Bifidobacterium longum subsp. longum JDM301 chromosome, complete

Start: 717015, End: 718610, Length: 1596

Host Lineage: Bifidobacterium longum; Bifidobacterium; Bifidobacteriaceae; Bifidobacteriales; Actinobacteria; Bacteria

General Information: Representatives of this genus naturally colonize the human gastrointestinal tract (GIT) and are important for establishing and maintaining homeostasis of the intestinal ecosystem to allow for normal digestion. Their presence has been associated with beneficial health effects, such as prevention of diarrhea, amelioration of lactose intolerance, or immunomodulation. The stabilizing effect on GIT microflora is attributed to the capacity of bifidobacteria to produce bacteriocins, which are bacteriostatic agents with a broad spectrum of action, and to their pH-reducing activity. Most of the ~30 known species of bifidobacteria have been isolated from the mammalian GIT, and some from the vaginal and oral cavity. All are obligate anaerobes belonging to the Actinomycetales, branch of Gram-positive bacteria with high GC content that also includes Corynebacteria, Mycobacteria, and Streptomycetes. This organism is found in adult humans and formula fed infants as a normal component of gut flora.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014824:133065:1560781560781575711494Ruminococcus albus 7 plasmid pRUMAL01, complete sequenceUMUC domain protein DNA-repair protein2e-154546
NC_015389:809474:8255258255258268951371Coriobacterium glomerans PW2 chromosome, complete genomeDNA-directed DNA polymerase1e-88327
NC_008598:21978:3488734887361521266Bacillus thuringiensis str. Al Hakam plasmid pALH1, completeDNA-damage repair protein (DNA polymerase IV)4e-36153
NC_013768:171889:1932141932141944701257Listeria monocytogenes 08-5923, complete genomehypothetical protein2e-32140
NC_013766:171889:1932141932141944701257Listeria monocytogenes 08-5578 chromosome, complete genomehypothetical protein2e-32140
NC_003212:2837366:2837366283736628386221257Listeria innocua Clip11262, complete genomehypothetical protein2e-31137
NC_009328:2161116:2199127219912722003801254Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeImpB/MucB/SamB family DNA-damage repair protein7e-30132
NC_008054:245184:2477802477802490871308Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completeUmuC-like DNA-repair protein6e-29129
NC_012673:785718:7857187857187870131296Exiguobacterium sp. AT1b, complete genomeDNA-directed DNA polymerase5e-28126
NC_014628:252500:2678282678282690661239Paenibacillus polymyxa SC2 plasmid pSC2, complete sequenceDNA polymerase IV 28e-28125
NC_013891:2643085:2643085264308526442781194Listeria seeligeri serovar 1/2b str. SLCC3954, complete genomeImpB/MucB/SamB family protein3e-27123
NC_016826:929259:9436149436149450291416Streptococcus infantarius subsp. infantarius CJ18 chromosome,ImpB/MucB/SamB family protein5e-27122
NC_014551:1872000:1887797188779718890471251Bacillus amyloliquefaciens DSM 7, complete genomelesion bypass phage DNA polymerase7e-27122
NC_017191:1173989:1189211118921111904611251Bacillus amyloliquefaciens XH7 chromosome, complete genomelesion bypass phage DNA polymerase2e-26120
NC_017188:1172181:1187634118763411888841251Bacillus amyloliquefaciens TA208 chromosome, complete genomelesion bypass phage DNA polymerase2e-26120
NC_004116:1276791:1278136127813612795511416Streptococcus agalactiae 2603V/R, complete genomeImpB/MucB/SamB family protein2e-25117
NC_017190:2130651:227102222710222271732711Bacillus amyloliquefaciens LL3 chromosome, complete genomelesion bypass phage DNA polymerase2e-25117
UCMB5137:2054735:2080025208002520811131089Bacillus atrophaeus UCMB-5137lesion bypass phage DNA polymerase2e-25117
NC_011660:2839201:2859628285962828607791152Listeria monocytogenes HCC23 chromosome, complete genomeImpB/MucB/SamB family protein7e-25115
NC_018704:896209:8992168992169004451230Amphibacillus xylanus NBRC 15112, complete genomeputative UmuC-like protein1e-1998.6
NC_009437:685214:6852146852146864491236Caldicellulosiruptor saccharolyticus DSM 8903, complete genomeDNA-directed DNA polymerase2e-1274.7
NC_016627:2593242:2598735259873525999761242Clostridium clariflavum DSM 19732 chromosome, complete genomenucleotidyltransferase/DNA polymerase involved in DNA repair2e-1171.2
NC_010611:208268:2320192320192330741056Acinetobacter baumannii ACICU, complete genomeNucleotidyltransferase/DNA polymerase2e-1170.9
NC_013165:2440883:2454883245488324561811299Slackia heliotrinireducens DSM 20476, complete genomenucleotidyltransferase/DNA polymerase involved in DNA repair3e-1170.5
NC_000964:2049899:206341120634112063758348Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein6e-1169.7
NC_015711:4811349:4814731481473148159391209Myxococcus fulvus HW-1 chromosome, complete genomeputative DNA polymerase IV8e-1168.9
NC_015687:303810:3246003246003257901191Clostridium acetobutylicum DSM 1731 chromosome, complete genomeDNA-damage repair protein, dinP/uvrX1e-1068.6
NC_003030:303812:3246033246033257931191Clostridium acetobutylicum ATCC 824, complete genomeDNA-damage repair protein, dinP/uvrX ortholog1e-1068.6
NC_015160:1697125:1712090171209017131811092Odoribacter splanchnicus DSM 20712 chromosome, complete genomeDNA polymerase IV1e-1068.2
NC_014032:1972623:1980243198024319813641122Salinibacter ruber M8 chromosome, complete genomeDNA polymerase IV4e-1067
NC_013939:441921:4585084585084597101203Deferribacter desulfuricans SSM1, complete genomeDNA polymerase IV3e-1067
NC_007677:1911109:1916857191685719179781122Salinibacter ruber DSM 13855, complete genomeputative DNA polymerase IV5e-1066.6
NC_017150:255474:2671062671062681851080Acetobacter pasteurianus IFO 3283-01-42C, complete genomeDNA polymerase IV7e-1065.9
NC_008767:1363288:1382716138271613837741059Neisseria meningitidis FAM18, complete genomeimpB/mucB/samB family protein7e-1065.9
NC_013162:811763:8142958142958153561062Capnocytophaga ochracea DSM 7271, complete genomeDNA-directed DNA polymerase8e-1065.9
NC_014752:1391615:1391615139161513926731059Neisseria lactamica ST-640, complete genomeimpB/mucB/samB family protein9e-1065.5
NC_012988:4262631:4265341426534142666721332Methylobacterium extorquens DM4, complete genomeDNA polymerase V subunit C3e-0963.9
NC_010725:1419272:1469060146906014702381179Methylobacterium populi BJ001, complete genome3e-0963.9
NC_010172:3894652:3897842389784238992781437Methylobacterium extorquens PA1, complete genomeDNA-directed DNA polymerase3e-0963.9
NC_013791:2839516:2849576284957628508201245Bacillus pseudofirmus OF4 chromosome, complete genomeDNA polymerase IV6e-0962.8
NC_010725:356609:3586503586503598911242Methylobacterium populi BJ001, complete genome6e-0962.8
NC_008262:1721496:1724602172460217256811080Clostridium perfringens SM101, complete genomeDNA polymerase IV8e-0962.4
NC_011757:276953:2927672927672940981332Methylobacterium chloromethanicum CM4, complete genomeDNA-directed DNA polymerase8e-0962.4
NC_017511:852260:8543458543458554511107Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genomeDNA polymerase IV9e-0962.4
NC_010655:1606901:1606901160690116079801080Akkermansia muciniphila ATCC BAA-835, complete genomeDNA-directed DNA polymerase1e-0862
NC_011035:933269:9373849373849384901107Neisseria gonorrhoeae NCCP11945 chromosome, complete genomeDNA polymerase IV1e-0862
NC_014803:709000:7120577120577131181062Pseudoalteromonas sp. SM9913 chromosome chromosome I, completeDNA polymerase IV2e-0861.2
NC_012918:2896671:2914646291464629158751230Geobacter sp. M21 chromosome, complete genomeDNA-directed DNA polymerase4e-0860.1
NC_011761:1499500:1513748151374815150311284Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completeumuC protein4e-0860.1
NC_003911:3453764:3478224347822434794861263Silicibacter pomeroyi DSS-3, complete genomeDNA polymerase IV5e-0860.1
NC_016445:89500:8996389963911351173Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeDNA polymerase V6e-0859.7
NC_015222:2475792:2495405249540524967001296Nitrosomonas sp. AL212 chromosome, complete genomeDNA-directed DNA polymerase6e-0859.7
NC_008149:1002453:1007774100777410088321059Yersinia pestis Nepal516, complete genomeDNA-damage-inducible protein P7e-0859.3
NC_010159:3502350:3515659351565935167171059Yersinia pestis Angola, complete genomeDNA polymerase IV7e-0859.3
NC_008150:3015000:3028427302842730294851059Yersinia pestis Antiqua, complete genomeDNA-damage-inducible protein P7e-0859.3
NC_017265:3375463:3389089338908933901471059Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,DNA polymerase IV8e-0859.3
NC_012668:3037345:3058519305851930596221104Vibrio cholerae MJ-1236 chromosome 1, complete sequenceerror-prone repair protein UmuC8e-0859.3
NC_017154:3576256:3589537358953735906071071Yersinia pestis D106004 chromosome, complete genomeDNA polymerase IV8e-0859.3
NC_003143:3583468:3596749359674935978071059Yersinia pestis CO92, complete genomeDNA polymerase IV7e-0859.3
NC_005810:754340:7605117605117615691059Yersinia pestis biovar Microtus str. 91001, complete genomeDNA polymerase IV7e-0859.3
NC_015942:1711026:1712945171294517141441200Acidithiobacillus ferrivorans SS3 chromosome, complete genomeDNA polymerase IV6e-0859.3
NC_014550:2355500:2365016236501623661821167Arthrobacter arilaitensis Re117, complete genomeputative DNA polymerase IV6e-0859.3
NC_017168:2158839:2164160216416021652181059Yersinia pestis A1122 chromosome, complete genomeDNA polymerase IV7e-0859.3
NC_017160:3560153:3573434357343435744921059Yersinia pestis D182038 chromosome, complete genomeDNA polymerase IV7e-0859.3
NC_014029:3633955:3647236364723636482941059Yersinia pestis Z176003 chromosome, complete genomeDNA polymerase IV7e-0859.3
NC_009381:3228500:3241013324101332420711059Yersinia pestis Pestoides F chromosome, complete genomeDNA polymerase IV7e-0859.3
NC_004088:1075454:1080763108076310818331071Yersinia pestis KIM, complete genomeDNA polymerase IV8e-0858.9
NC_011146:1998981:2024621202462120258501230Geobacter bemidjiensis Bem, complete genomeUMUC domain protein DNA-repair protein9e-0858.9
NC_002939:47406:5200052000532411242Geobacter sulfurreducens PCA, complete genomeImpB/MucB/SamB family protein2e-0758.2
NC_014551:1279229:129524612952461295638393Bacillus amyloliquefaciens DSM 7, complete genomeDNA polymerase IV Pol IV1e-0758.2
NC_017188:2172706:218671421867142187106393Bacillus amyloliquefaciens TA208 chromosome, complete genomeDNA polymerase IV Pol IV1e-0758.2
NC_015737:664999:6822406822406834481209Clostridium sp. SY8519, complete genomehypothetical protein2e-0757.8
NC_009708:3542336:3555616355561635566741059Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeDNA polymerase IV2e-0757.8
NC_010465:3597000:3609473360947336105311059Yersinia pseudotuberculosis YPIII, complete genomeDNA-directed DNA polymerase2e-0757.8
NC_006155:1074298:1080413108041310814711059Yersinia pseudotuberculosis IP 32953, complete genomeDNA polymerase IV2e-0757.8
NC_010634:1056441:1062556106255610636141059Yersinia pseudotuberculosis PB1/+, complete genomeDNA-repair protein2e-0757.8
NC_015730:3853065:3875738387573838769911254Roseobacter litoralis Och 149 chromosome, complete genomeDNA polymerase IV2e-0757.8
NC_015850:110364:1553561553561564771122Acidithiobacillus caldus SM-1 chromosome, complete genomeDNA polymerase IV3e-0757.4
NC_015424:3520783:3553264355326435545231260Aeromonas veronii B565 chromosome, complete genomeprotein UmuC3e-0757.4
NC_017167:2298962:2345720234572023469761257Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1DNA-directed DNA polymerase2e-0757.4
NC_015850:1947000:1960375196037519614961122Acidithiobacillus caldus SM-1 chromosome, complete genomeDNA polymerase IV3e-0757
NC_015424:2726223:2763991276399127652681278Aeromonas veronii B565 chromosome, complete genomeprotein UmuC4e-0756.6
NC_004547:3866439:3888324388832438893821059Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeDNA polymerase IV5e-0756.2
NC_008570:1143578:1164200116420011654591260Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeprotein UmuC6e-0756.2
NC_015731:2460248:2458963245896324602551293Nitrosomonas sp. Is79A3 chromosome, complete genomeUMUC domain-containing protein DNA-repair protein7e-0756.2
NC_016810:2027311:2037460203746020387281269Salmonella enterica subsp. enterica serovar Typhimurium strDNA repair protein8e-0755.8
NC_016856:2085283:2091297209129720925651269Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SDNA polymerase V subunit UmuC8e-0755.8
NC_016857:2027311:2037460203746020387281269Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74DNA polymerase V subunit UmuC8e-0755.8
NC_016863:2029340:2039489203948920407571269Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1DNA polymerase V subunit UmuC8e-0755.8
NC_017046:2026672:2036821203682120380891269Salmonella enterica subsp. enterica serovar Typhimurium str. 798DNA repair protein8e-0755.8
NC_020064:1962172:1974884197488419761521269Serratia marcescens FGI94, complete genomenucleotidyltransferase/DNA polymerase involved in DNA repair7e-0755.8
NC_009997:5188221:5208740520874052099961257Shewanella baltica OS195, complete genomeDNA-directed DNA polymerase1e-0655.5
NC_009665:5072413:5091613509161350928691257Shewanella baltica OS185 chromosome, complete genomeDNA-directed DNA polymerase1e-0655.5
NC_016901:5130147:5149362514936251506181257Shewanella baltica OS678 chromosome, complete genomeDNA-directed DNA polymerase1e-0655.5
NC_004431:1443968:1468502146850214697701269Escherichia coli CFT073, complete genomeDNA polymerase IV1e-0655.5
NC_015572:2186394:2186394218639421876951302Methylomonas methanica MC09 chromosome, complete genomeDNA-directed DNA polymerase1e-0655.5
NC_011742:1221416:1245958124595812472261269Escherichia coli S88 chromosome, complete genomeDNA polymerase V subunit UmuC1e-0655.5
NC_009801:1296488:1321867132186713231351269Escherichia coli E24377A, complete genomeprotein UmuC9e-0755.5
NC_010473:1245284:1270650127065012719181269Escherichia coli str. K-12 substr. DH10B, complete genomeDNA polymerase V, subunit C9e-0755.5
NC_012967:1205985:1231336123133612326041269Escherichia coli B str. REL606 chromosome, complete genomeDNA polymerase V subunit UmuC9e-0755.5
NC_009792:1739970:1746105174610517473701266Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein9e-0755.5
NC_011745:1287714:1311024131102413122861263Escherichia coli ED1a chromosome, complete genomeDNA polymerase V subunit UmuC9e-0755.5
NC_004631:948054:9817399817399830071269Salmonella enterica subsp. enterica serovar Typhi Ty2, completeDNA polymerase IV1e-0655.1
NC_016832:948029:9794149794149806821269Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein1e-0655.1
NC_011751:1446073:1477461147746114787291269Escherichia coli UMN026 chromosome, complete genomeDNA polymerase V subunit UmuC1e-0655.1
NC_017249:908500:9085689085689096681101Bradyrhizobium japonicum USDA 6, complete genomeDNA-damage-inducible protein1e-0655.1
NC_014532:3596097:3628379362837936296561278Halomonas elongata DSM 2581, complete genomeDNA-directed DNA polymerase1e-0655.1
NC_011004:4073916:4089353408935340905911239Rhodopseudomonas palustris TIE-1, complete genomeDNA-directed DNA polymerase1e-0655.1
NC_007963:1552761:1564357156435715656371281Chromohalobacter salexigens DSM 3043, complete genomeDNA-directed DNA polymerase1e-0655.1
NC_008609:1976403:2051262205126220524971236Pelobacter propionicus DSM 2379, complete genomeDNA-directed DNA polymerase1e-0655.1
CP002207:1620700:164183716418371642172336Bacillus atrophaeus 1942, complete genomelesion bypass phage DNA polymerase2e-0654.7
NC_014639:1620700:164183716418371642172336Bacillus atrophaeus 1942 chromosome, complete genomelesion bypass phage DNA polymerase2e-0654.7
NC_015410:2351464:2380712238071223819711260Pseudomonas mendocina NK-01 chromosome, complete genomeultraviolet light resistance protein B2e-0654.7
NC_014307:1619000:1638897163889716399851089Ralstonia solanacearum CFBP2957 chromosome, complete genomeDNA polymerase iv, devoid of proofreading, damage-inducible protein p2e-0654.3
NC_014910:1912552:1919375191937519206611287Alicycliphilus denitrificans BC chromosome, complete genomeDNA-directed DNA polymerase2e-0654.3
NC_010554:2646806:2725243272524327265111269Proteus mirabilis HI4320, complete genomeDNA repair protein2e-0654.3
NC_000964:2049899:206272120627212063332612Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein2e-0654.3
NC_008253:1228485:1251657125165712529251269Escherichia coli 536, complete genomeUmuC protein3e-0653.9
NC_011601:1315746:1337755133775513390231269Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeDNA polymerase V subunit UmuC3e-0653.9
NC_009436:2395913:2403234240323424045021269Enterobacter sp. 638, complete genomeDNA polymerase V subunit UmuC4e-0653.5
NC_015172:1429266:1431741143174114329881248Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeDNA polymerase IV4e-0653.1
NC_015496:1590674:1605169160516916062811113Krokinobacter diaphorus 4H-3-7-5 chromosome, complete genomeDNA-directed DNA polymerase5e-0653.1
NC_011894:7109374:7118741711874171200691329Methylobacterium nodulans ORS 2060, complete genomeUMUC domain protein DNA-repair protein5e-0653.1