Pre_GI: BLASTP Hits

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Query: NC_014169:1784435:1811220 Bifidobacterium longum subsp. longum JDM301 chromosome, complete

Start: 1811220, End: 1811615, Length: 396

Host Lineage: Bifidobacterium longum; Bifidobacterium; Bifidobacteriaceae; Bifidobacteriales; Actinobacteria; Bacteria

General Information: Representatives of this genus naturally colonize the human gastrointestinal tract (GIT) and are important for establishing and maintaining homeostasis of the intestinal ecosystem to allow for normal digestion. Their presence has been associated with beneficial health effects, such as prevention of diarrhea, amelioration of lactose intolerance, or immunomodulation. The stabilizing effect on GIT microflora is attributed to the capacity of bifidobacteria to produce bacteriocins, which are bacteriostatic agents with a broad spectrum of action, and to their pH-reducing activity. Most of the ~30 known species of bifidobacteria have been isolated from the mammalian GIT, and some from the vaginal and oral cavity. All are obligate anaerobes belonging to the Actinomycetales, branch of Gram-positive bacteria with high GC content that also includes Corynebacteria, Mycobacteria, and Streptomycetes. This organism is found in adult humans and formula fed infants as a normal component of gut flora.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017218:1655009:167606016760601676455396Bifidobacterium breve ACS-071-V-Sch8b chromosome, complete genomeRbsD/FucU transport family protein3e-69259
NC_013721:1581370:159709915970991597494396Gardnerella vaginalis 409-05, complete genomeRbsD/FucU transport family protein6e-48189
NC_014039:15236:222032220322586384Propionibacterium acnes SK137 chromosome, complete genomeRibose ABC transport system, high affinity permease RbsD3e-26117
NC_016511:15100:220682206822451384Propionibacterium acnes TypeIA2 P.acn31 chromosome, completeD-ribose pyranase7e-26115
NC_016512:15102:220702207022453384Propionibacterium acnes TypeIA2 P.acn17 chromosome, completeD-ribose pyranase7e-26115
NC_016516:15102:220702207022453384Propionibacterium acnes TypeIA2 P.acn33 chromosome, completeD-ribose pyranase7e-26115
NC_006085:15246:222142221422597384Propionibacterium acnes KPA171202, complete genomehigh affinity ribose transport protein RbsD6e-26115
NC_018665:2163713:218550121855012185890390Exiguobacterium antarcticum B7 chromosome, complete genomeD-ribose pyranase3e-21100
NC_010556:2328303:234760123476012347990390Exiguobacterium sibiricum 255-15, complete genomeRbsD or FucU transport2e-2097.4
NC_011725:681387:687974687974688369396Bacillus cereus B4264 chromosome, complete genomeD-ribose pyranase4e-2096.7
NC_013521:107937:112705112705113088384Sanguibacter keddieii DSM 10542, complete genomeABC-type ribose transport system, auxiliary component4e-2096.7
NC_010184:661226:669170669170669565396Bacillus weihenstephanensis KBAB4, complete genomeRbsD or FucU transport8e-2095.9
NC_006274:659922:672436672436672831396Bacillus cereus E33L, complete genomeribose ABC transporter, permease6e-2095.9
NC_016771:701909:711761711761712156396Bacillus cereus NC7401, complete genomeribose ABC transporter protein1e-1995.5
NC_011969:726369:733401733401733796396Bacillus cereus Q1 chromosome, complete genomed-ribose pyranase1e-1995.5
NC_004722:650950:657537657537657932396Bacillus cereus ATCC 14579, complete genomeHigh affinity ribose transport protein rbsD1e-1995.1
NC_011772:647778:655881655881656276396Bacillus cereus G9842, complete genomeribose ABC transporter protein1e-1995.1
NC_017208:671128:680051680051680446396Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeD-ribose pyranase1e-1995.1
NC_021177:7159654:718079171807917181180390Streptomyces fulvissimus DSM 40593, complete genomeD-ribose pyranase 2 n12e-1994
NC_013205:2332174:234225723422572342652396Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,RbsD or FucU transport2e-1994
NC_007530:674265:684105684105684500396Bacillus anthracis str. 'Ames Ancestor', complete genomeribose abc transporter protein4e-1993.2
NC_005945:674337:684000684000684395396Bacillus anthracis str. Sterne, complete genomeribose ABC transporter protein4e-1993.2
NC_003997:674265:684104684104684499396Bacillus anthracis str. Ames, complete genomeribose ABC transporter protein4e-1993.2
NC_005957:667954:674987674987675382396Bacillus thuringiensis serovar konkukian str. 97-27, completeribose ABC transporter, permease4e-1993.2
NC_011773:688689:698542698542698937396Bacillus cereus AH820 chromosome, complete genomeD-ribose pyranase4e-1993.2
NC_012659:678289:684005684005684400396Bacillus anthracis str. A0248, complete genomeD-ribose pyranase4e-1993.2
NC_016779:657568:665514665514665909396Bacillus cereus F837/76 chromosome, complete genomeRibose ABC transporter high affinity permease RbsD4e-1993.2
NC_016113:11500:286142861429003390Streptomyces cattleya NRRL 8057 plasmid pSCAT, complete sequenceribose ABC transporter (membrane bound ribose binding)3e-1890.5
NC_015161:1556766:156242115624211562816396Deinococcus proteolyticus MRP chromosome, complete genomeD-ribose pyranase1e-1788.2
NC_017095:166896:168375168375168761387Fervidobacterium pennivorans DSM 9078 chromosome, complete genomeABC-type ribose transport system, auxiliary component1e-1685.1
NC_012214:1:253832538325802420Erwinia pyrifoliae Ep1/96, complete genomeD-ribose high-affinity transport system6e-1682.8
NC_016614:686887:699051699051699470420Vibrio sp. EJY3 chromosome 2, complete sequenceD-ribose pyranase1e-1582
NC_003366:1901898:190443919044391904834396Clostridium perfringens str. 13, complete genomeprobable ribose ABC transporter3e-1580.5
NC_008261:2117207:211974921197492120144396Clostridium perfringens ATCC 13124, complete genomeribose ABC transporter, ribose-binding protein4e-1580.1
NC_012785:638000:648054648054648452399Kosmotoga olearia TBF 19.5.1, complete genomeRbsD or FucU transport4e-1580.1
NC_004337:3590323:394205639420563942475420Shigella flexneri 2a str. 301, complete genomeD-ribose high-affinity transport system; membrane-associated protein4e-1580.1
NC_015589:1468774:148905014890501489448399Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeRbsD or FucU transport4e-1580.1
NC_008593:1797000:181901718190171819412396Clostridium novyi NT, complete genomeribose ABC transporter protein RbsD5e-1579.7
NC_010320:143109:163609163609164001393Thermoanaerobacter sp. X514 chromosome, complete genomeD-ribose pyranase1e-1478.2
NC_014538:187747:203474203474203866393Thermoanaerobacter sp. X513 chromosome, complete genomeRbsD or FucU transport1e-1478.2
NC_015425:2024154:204577020457702046165396Clostridium botulinum BKT015925 chromosome, complete genomeribose ABC transporter protein RbsD1e-1375.5
NC_004557:2475030:249155124915512491946396Clostridium tetani E88, complete genomehigh affinity ribose transport protein rbsD3e-1373.9
NC_000853:960248:976804976804977211408Thermotoga maritima MSB8, complete genomeribose ABC transporter, membrane-associated protein7e-1062.8
NC_011978:1581994:158610815861081586515408Thermotoga neapolitana DSM 4359, complete genomeRibose ABC transporter, membrane-associated protein7e-1062.8
NC_008148:1859888:191606419160641916528465Rubrobacter xylanophilus DSM 9941, complete genomeRbsD or FucU transport8e-0855.8