Pre_GI: BLASTN Hits

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Query: NC_013941:3300000 Escherichia coli O55:H7 str. CB9615 chromosome, complete genome

Start: 3300000, End: 3351181, Length: 51182

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The E. coli O55:H7 strain CB9615 was isolated from an infant with diarrhea in Germany in 2003 and confirmed to belong to the same sequence type (ST11) as the O157:H7 clone by multilocus sequence typing. The O55:H7 and O157:H7 E. coli clones have been shown to be closely related. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_010102:28817142881714290709925386Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,0646BLASTN svgBLASTP svg
NC_010067:191190*19119023335342164Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete01055BLASTN svgBLASTP svg
NC_011740:27699612769961278959919639Escherichia fergusonii ATCC 35469, complete genome02101BLASTN svgBLASTP svg
NC_007946:29313642931364295051219149Escherichia coli UTI89, complete genome03975BLASTN svgBLASTP svg
NC_008563:2946391*2946391296667220282Escherichia coli APEC O1, complete genome03975BLASTN svgBLASTP svg
CU928145:82436782436784378119415Escherichia coli 55989 chromosome, complete genome03992BLASTN svgBLASTP svg
NC_011748:82436782436784378119415Escherichia coli 55989, complete genome03992BLASTN svgBLASTP svg
NC_009800:289000*28900031038921390Escherichia coli HS, complete genome04573BLASTN svgBLASTP svg
NC_011751:643976*64397666569121716Escherichia coli UMN026 chromosome, complete genome04823BLASTN svgBLASTP svg
AP010958:5361207*5361207538029819092Escherichia coli O103:H2 str. 12009 DNA, complete genome05574BLASTN svgBLASTP svg
NC_009792:32453683245368328222336856Citrobacter koseri ATCC BAA-895, complete genome05612BLASTN svgBLASTP svg
NC_009792:36653693665369370602240654Citrobacter koseri ATCC BAA-895, complete genome01045BLASTN svgBLASTP svg
NC_007946:26254612625461264923523775Escherichia coli UTI89, complete genome01017BLASTN svgBLASTP svg
NC_006905:28576992857699289909341395Salmonella enterica subsp. enterica serovar Choleraesuis str0686BLASTN svgBLASTP svg
NC_011080:28979772897977291952121545Salmonella enterica subsp. enterica serovar Newport str. SL254,0686BLASTN svgBLASTP svg
NC_011083:2847318*2847318291739170074Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,0686BLASTN svgBLASTP svg
NC_011149:28298112829811285287123061Salmonella enterica subsp. enterica serovar Agona str. SL483,0686BLASTN svgBLASTP svg
NC_003198:27694492769449279300723559Salmonella enterica subsp. enterica serovar Typhi str. CT18,0694BLASTN svgBLASTP svg
NC_004631:27553062755306277886423559Salmonella enterica subsp. enterica serovar Typhi Ty2, complete0694BLASTN svgBLASTP svg
NC_003197:2894344*2894344294288048537Salmonella typhimurium LT2, complete genome0710BLASTN svgBLASTP svg
NC_011083:374000*37400039609922100Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,0733BLASTN svgBLASTP svg
NC_002655:30194030194032759925660Escherichia coli O157:H7 EDL933, complete genome01007BLASTN svgBLASTP svg
NC_002695:30193930193932873026792Escherichia coli O157:H7 str. Sakai, complete genome01007BLASTN svgBLASTP svg
NC_011751:1405381*1405381142709921719Escherichia coli UMN026 chromosome, complete genome06375BLASTN svgBLASTP svg
CP002185:2919752*2919752294461024859Escherichia coli W, complete genome06387BLASTN svgBLASTP svg
CP002516:1165726*1165726119130025575Escherichia coli KO11, complete genome06387BLASTN svgBLASTP svg
NC_011748:2973968*2973968299959925632Escherichia coli 55989, complete genome010910BLASTN svgBLASTP svg
NC_010498:2847359*2847359287165924301Escherichia coli SMS-3-5, complete genome011410BLASTN svgBLASTP svg
NC_011750:2928990*2928990296940040411Escherichia coli IAI39 chromosome, complete genome011430BLASTN svgBLASTP svg
CU928160:2818750*2818750284490226153Escherichia coli IAI1 chromosome, complete genome015260BLASTN svgBLASTP svg
NC_010473:2839902*2839902288978149880Escherichia coli str. K-12 substr. DH10B, complete genome020610BLASTN svgBLASTP svg
AC_000091:2747520*2747520280214854629Escherichia coli W3110 DNA, complete genome020610BLASTN svgBLASTP svg
NC_000913:2746886*2746886280151454629Escherichia coli K12, complete genome020610BLASTN svgBLASTP svg
NC_010468:1130000*1130000115350023501Escherichia coli ATCC 8739, complete genome020810BLASTN svgBLASTP svg
NC_002655:3538656*3538656358072742072Escherichia coli O157:H7 EDL933, complete genome023560BLASTN svgBLASTP svg
NC_002695:3468873*3468873351343744565Escherichia coli O157:H7 str. Sakai, complete genome023590BLASTN svgBLASTP svg
CU928145:2973968*2973968299959925632Escherichia coli 55989 chromosome, complete genome010910BLASTN svgBLASTP svg
NC_008258:2905413*2905413292427518863Shigella flexneri 5 str. 8401, complete genome09846BLASTN svgBLASTP svg
NC_009801:2898426*2898426294876250337Escherichia coli E24377A, complete genome09045BLASTN svgBLASTP svg
NC_007946:1239278*1239278125938320106Escherichia coli UTI89, complete genome06415BLASTN svgBLASTP svg
NC_008563:1175035*1175035119859923565Escherichia coli APEC O1, complete genome06415BLASTN svgBLASTP svg
AP010958:32387423238742326213723396Escherichia coli O103:H2 str. 12009 DNA, complete genome06451BLASTN svgBLASTP svg
NC_004431:14016811401681142114919469Escherichia coli CFT073, complete genome06639BLASTN svgBLASTP svg
NC_004337:2747917*2747917277096123045Shigella flexneri 2a str. 301, complete genome06853BLASTN svgBLASTP svg
NC_004741:2741971*2741971276422322253Shigella flexneri 2a str. 2457T, complete genome06853BLASTN svgBLASTP svg
NC_011751:3048490*3048490309200343514Escherichia coli UMN026 chromosome, complete genome07329BLASTN svgBLASTP svg
NC_007384:2933625*2933625295770924085Shigella sonnei Ss046, complete genome07519BLASTN svgBLASTP svg
NC_002655:13329611332961135150618546Escherichia coli O157:H7 EDL933, complete genome07707BLASTN svgBLASTP svg
NC_009800:2788164*2788164280740719244Escherichia coli HS, complete genome08405BLASTN svgBLASTP svg
NC_011751:14460731446073147872932657Escherichia coli UMN026 chromosome, complete genome8e-178632BLASTN svgBLASTP svg
NC_010468:2699000*2699000272285223853Escherichia coli ATCC 8739, complete genome5e-173617BLASTN svgBLASTP svg
NC_010473:1245284*1245284127191826635Escherichia coli str. K-12 substr. DH10B, complete genome5e-173617BLASTN svgBLASTP svg
NC_010498:1995500*1995500202472729228Escherichia coli SMS-3-5, complete genome5e-173617BLASTN svgBLASTP svg
AP010958:1339263*1339263136273323471Escherichia coli O103:H2 str. 12009 DNA, complete genome1e-170609BLASTN svgBLASTP svg
CP002185:1298675*1298675132326124587Escherichia coli W, complete genome1e-170609BLASTN svgBLASTP svg
CP002516:2786000*2786000281204426045Escherichia coli KO11, complete genome1e-170609BLASTN svgBLASTP svg
CU928145:1300863*1300863132330622444Escherichia coli 55989 chromosome, complete genome1e-170609BLASTN svgBLASTP svg
CU928160:1232510*1232510125609923590Escherichia coli IAI1 chromosome, complete genome1e-170609BLASTN svgBLASTP svg
NC_009800:1254409*1254409127914624738Escherichia coli HS, complete genome1e-170609BLASTN svgBLASTP svg
NC_009801:1296488*1296488132313526648Escherichia coli E24377A, complete genome1e-170609BLASTN svgBLASTP svg
NC_011748:1300863*1300863132330622444Escherichia coli 55989, complete genome1e-170609BLASTN svgBLASTP svg
NC_008253:12284851228485125292524441Escherichia coli 536, complete genome2e-163585BLASTN svgBLASTP svg
NC_004431:14439681443968146977025803Escherichia coli CFT073, complete genome4e-161577BLASTN svgBLASTP svg
NC_006905:368942*36894239327424333Salmonella enterica subsp. enterica serovar Choleraesuis str2e-157565BLASTN svgBLASTP svg
NC_011750:19788011978801200896030160Escherichia coli IAI39 chromosome, complete genome2e-157565BLASTN svgBLASTP svg
NC_008563:12178041217804124159923796Escherichia coli APEC O1, complete genome3e-156561BLASTN svgBLASTP svg
NC_007946:12805081280508130218721680Escherichia coli UTI89, complete genome3e-156561BLASTN svgBLASTP svg
NC_013421:18190361819036185909940064Pectobacterium wasabiae WPP163, complete genome6e-154553BLASTN svgBLASTP svg
AC_000091:55892055892058720428285Escherichia coli W3110 DNA, complete genome1e-148535BLASTN svgBLASTP svg
NC_000913:558920*55892058509926180Escherichia coli K12, complete genome1e-148535BLASTN svgBLASTP svg
NC_010473:498252*49825252418825937Escherichia coli str. K-12 substr. DH10B, complete genome1e-148535BLASTN svgBLASTP svg
NC_015224:35875003587500361767930180Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,2e-129472BLASTN svgBLASTP svg
NC_010658:1193225*1193225121671123487Shigella boydii CDC 3083-94, complete genome3e-109404BLASTN svgBLASTP svg
AP010958:2911741*2911741294759935859Escherichia coli O103:H2 str. 12009 DNA, complete genome8e-107396BLASTN svgBLASTP svg
NC_011740:20721732072173211413741965Escherichia fergusonii ATCC 35469, complete genome8e-104387BLASTN svgBLASTP svg
NC_012214:2805297*2805297283239127095Erwinia pyrifoliae Ep1/96, complete genome4e-90341BLASTN svgBLASTP svg
NC_014562:2563466*2563466261248449019Pantoea vagans C9-1 chromosome, complete genome7e-89337BLASTN svgBLASTP svg
NC_010694:10527221052722108466031939Erwinia tasmaniensis, complete genome1e-68270BLASTN svgBLASTP svg
NC_008258:18738051873805189655222748Shigella flexneri 5 str. 8401, complete genome2e-61246BLASTN svgBLASTP svg
NC_008563:29099452909945293044120497Escherichia coli APEC O1, complete genome8e-61244BLASTN svgBLASTP svg
NC_007946:28947932894793291753922747Escherichia coli UTI89, complete genome8e-61244BLASTN svgBLASTP svg
NC_008258:26980626980629518525380Shigella flexneri 5 str. 8401, complete genome2e-52216BLASTN svgBLASTP svg
NC_006511:27184012718401273705118651Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC3e-51212BLASTN svgBLASTP svg
NC_020063:2565605*2565605259927233668Enterobacteriaceae bacterium strain FGI 57, complete genome1e-50210BLASTN svgBLASTP svg
NC_015663:47674434767443479659929157Enterobacter aerogenes KCTC 2190 chromosome, complete genome1e-44190BLASTN svgBLASTP svg
NC_015663:45221094522109454904226934Enterobacter aerogenes KCTC 2190 chromosome, complete genome1e-37167BLASTN svgBLASTP svg
NC_007963:22320002232000225937927380Chromohalobacter salexigens DSM 3043, complete genome6e-37165BLASTN svgBLASTP svg
NC_020181:52170005217000524709930100Enterobacter aerogenes EA1509E, complete genome3e-35159BLASTN svgBLASTP svg
NC_012917:1840172*1840172189159251421Pectobacterium carotovorum subsp. carotovorum PC1, complete genome8e-24121BLASTN svgBLASTP svg
NC_004431:30126683012668303118918522Escherichia coli CFT073, complete genome8e-24121BLASTN svgBLASTP svg
NC_012880:37486653748665378917040506Dickeya dadantii Ech703, complete genome5e-22115BLASTN svgBLASTP svg
NC_008258:1934479*1934479196306928591Shigella flexneri 5 str. 8401, complete genome2e-21113BLASTN svgBLASTP svg
NC_014500:84249384249388059638104Dickeya dadantii 3937 chromosome, complete genome7e-21111BLASTN svgBLASTP svg
NC_013592:80428880428883459430307Dickeya dadantii Ech586, complete genome7e-21111BLASTN svgBLASTP svg
NC_008258:2045000*2045000206275017751Shigella flexneri 5 str. 8401, complete genome4e-19105BLASTN svgBLASTP svg
CU928145:1408280*1408280143235524076Escherichia coli 55989 chromosome, complete genome2e-18103BLASTN svgBLASTP svg
CU928145:1773642*1773642179521821577Escherichia coli 55989 chromosome, complete genome2e-18103BLASTN svgBLASTP svg
NC_002655:2142587*2142587216371121125Escherichia coli O157:H7 EDL933, complete genome2e-18103BLASTN svgBLASTP svg
NC_002695:1929215*1929215195011620902Escherichia coli O157:H7 str. Sakai, complete genome2e-18103BLASTN svgBLASTP svg
NC_007384:1320287*1320287134781127525Shigella sonnei Ss046, complete genome2e-18103BLASTN svgBLASTP svg
NC_010658:1933605*1933605196015326549Shigella boydii CDC 3083-94, complete genome2e-18103BLASTN svgBLASTP svg
NC_011748:1408280*1408280143235524076Escherichia coli 55989, complete genome2e-18103BLASTN svgBLASTP svg
NC_011748:1773642*1773642179521821577Escherichia coli 55989, complete genome2e-18103BLASTN svgBLASTP svg
AC_000091:1191353*1191353122209930747Escherichia coli W3110 DNA, complete genome7e-18101BLASTN svgBLASTP svg
CU928160:4570498*4570498461509944602Escherichia coli IAI1 chromosome, complete genome7e-18101BLASTN svgBLASTP svg
NC_000913:1188999*1188999122144532447Escherichia coli K12, complete genome7e-18101BLASTN svgBLASTP svg
NC_014837:3739408*3739408376471125304Pantoea sp. At-9b chromosome, complete genome7e-18101BLASTN svgBLASTP svg
NC_010102:28621782862178288012617949Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,1e-1697.6BLASTN svgBLASTP svg
NC_000913:303719*30371932647122753Escherichia coli K12, complete genome4e-1695.6BLASTN svgBLASTP svg
NC_000913:1087062*1087062110699919938Escherichia coli K12, complete genome4e-1695.6BLASTN svgBLASTP svg
CU928160:2091249*2091249211444123193Escherichia coli IAI1 chromosome, complete genome4e-1695.6BLASTN svgBLASTP svg
CU928159:30700*307004909918400Escherichia coli str. 55989 plasmid 55989p, complete genome4e-1695.6BLASTN svgBLASTP svg
CP002516:44744*447447499130248Escherichia coli KO11, complete genome4e-1695.6BLASTN svgBLASTP svg
CP002185:4035502*4035502406409928598Escherichia coli W, complete genome4e-1695.6BLASTN svgBLASTP svg
AC_000091:30371930371932647122753Escherichia coli W3110 DNA, complete genome4e-1695.6BLASTN svgBLASTP svg
AC_000091:1083798*1083798110686123064Escherichia coli W3110 DNA, complete genome4e-1695.6BLASTN svgBLASTP svg
NC_004337:1065609*1065609109071125103Shigella flexneri 2a str. 301, complete genome4e-1695.6BLASTN svgBLASTP svg
NC_004337:3049118*3049118311609966982Shigella flexneri 2a str. 301, complete genome4e-1695.6BLASTN svgBLASTP svg
NC_004741:3041294*3041294310468963396Shigella flexneri 2a str. 2457T, complete genome4e-1695.6BLASTN svgBLASTP svg
NC_013716:5201097*5201097527659975503Citrobacter rodentium ICC168, complete genome4e-1695.6BLASTN svgBLASTP svg
NC_011740:28599332859933288499725065Escherichia fergusonii ATCC 35469, complete genome4e-1695.6BLASTN svgBLASTP svg
NC_011083:45478254547825460814560321Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,4e-1695.6BLASTN svgBLASTP svg
NC_010498:22783062278306230147623171Escherichia coli SMS-3-5, complete genome4e-1695.6BLASTN svgBLASTP svg
NC_010473:27994827994830350723560Escherichia coli str. K-12 substr. DH10B, complete genome4e-1695.6BLASTN svgBLASTP svg
NC_010468:40594364059436408235622921Escherichia coli ATCC 8739, complete genome4e-1695.6BLASTN svgBLASTP svg
NC_010468:2809125*2809125282748818364Escherichia coli ATCC 8739, complete genome4e-1695.6BLASTN svgBLASTP svg
NC_008258:1076922*1076922110024923328Shigella flexneri 5 str. 8401, complete genome4e-1695.6BLASTN svgBLASTP svg
NC_013850:1887556*1887556193878551230Klebsiella variicola At-22 chromosome, complete genome3e-1489.7BLASTN svgBLASTP svg
NC_003198:44534574453457450773054274Salmonella enterica subsp. enterica serovar Typhi str. CT18,1e-1387.7BLASTN svgBLASTP svg
NC_006905:13424741342474137811135638Salmonella enterica subsp. enterica serovar Choleraesuis str1e-1387.7BLASTN svgBLASTP svg
NC_009801:17566101756610177871522106Escherichia coli E24377A, complete genome1e-1387.7BLASTN svgBLASTP svg
NC_009801:30138383013838304465430817Escherichia coli E24377A, complete genome1e-1387.7BLASTN svgBLASTP svg
NC_015663:770485*77048579596825484Enterobacter aerogenes KCTC 2190 chromosome, complete genome4e-1385.7BLASTN svgBLASTP svg
NC_011080:28704282870428289413023703Salmonella enterica subsp. enterica serovar Newport str. SL254,2e-1283.8BLASTN svgBLASTP svg
NC_006905:4638707*4638707467273934033Salmonella enterica subsp. enterica serovar Choleraesuis str6e-1281.8BLASTN svgBLASTP svg
NC_015224:3892972*3892972393636443393Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,3e-1179.8BLASTN svgBLASTP svg
NC_008149:587689*58768961062122933Yersinia pestis Nepal516, complete genome3e-1179.8BLASTN svgBLASTP svg
NC_006155:40620004062000408523223233Yersinia pseudotuberculosis IP 32953, complete genome3e-1179.8BLASTN svgBLASTP svg
NC_010067:25297502529750259435464605Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete4e-1075.8BLASTN svgBLASTP svg
NC_013282:12009931200993124927948287Cronobacter turicensis, complete genome4e-1075.8BLASTN svgBLASTP svg
NC_014500:31752833175283321401838736Dickeya dadantii 3937 chromosome, complete genome4e-1075.8BLASTN svgBLASTP svg
NC_002505:514732*51473255228437553Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete2e-0973.8BLASTN svgBLASTP svg
NC_010067:2304313*2304313233059926287Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete6e-0971.9BLASTN svgBLASTP svg
NC_006511:25015002501500252217820679Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC6e-0971.9BLASTN svgBLASTP svg
NC_011740:448000*44800047065722658Escherichia fergusonii ATCC 35469, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_015061:59624759624762407627830Rahnella sp. Y9602 chromosome, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_006511:26779642677964270110823145Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC4e-0765.9BLASTN svgBLASTP svg
NC_009778:29932182993218302409930882Enterobacter sakazakii ATCC BAA-894, complete genome4e-0765.9BLASTN svgBLASTP svg
NC_012214:1117325*1117325114343626112Erwinia pyrifoliae Ep1/96, complete genome4e-0765.9BLASTN svgBLASTP svg
NC_013456:2984491*2984491300234717857Vibrio sp. Ex25 chromosome 1, complete genome4e-0765.9BLASTN svgBLASTP svg
NC_014306:64215264215266635524204Erwinia billingiae Eb661, complete genome4e-0765.9BLASTN svgBLASTP svg
NC_020181:51305135130513517631045798Enterobacter aerogenes EA1509E, complete genome4e-0765.9BLASTN svgBLASTP svg
NC_003197:28702682870268289109020823Salmonella typhimurium LT2, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_009648:32244953224495325660032106Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_009778:56700056700060530938310Enterobacter sakazakii ATCC BAA-894, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_011149:28021992802199282596423766Salmonella enterica subsp. enterica serovar Agona str. SL483,2e-0663.9BLASTN svgBLASTP svg
NC_012912:37491563749156377027021115Dickeya zeae Ech1591, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_013282:33896193389619341209922481Cronobacter turicensis, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_014121:40431984043198407122728030Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete2e-0663.9BLASTN svgBLASTP svg
NC_020063:1051310*1051310108258031271Enterobacteriaceae bacterium strain FGI 57, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_020260:603796*60379665197748182Cronobacter sakazakii Sp291, complete genome2e-0663.9BLASTN svgBLASTP svg
AP010958:3853082*3853082389809945018Escherichia coli O103:H2 str. 12009 DNA, complete genome6e-0661.9BLASTN svgBLASTP svg