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Query: NC_013941:1613595:1624790 Escherichia coli O55:H7 str. CB9615 chromosome, complete genome

Start: 1624790, End: 1625359, Length: 570

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The E. coli O55:H7 strain CB9615 was isolated from an infant with diarrhea in Germany in 2003 and confirmed to belong to the same sequence type (ST11) as the O157:H7 clone by multilocus sequence typing. The O55:H7 and O157:H7 E. coli clones have been shown to be closely related. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013361:1754346:176723717672371767806570Escherichia coli O26:H11 str. 11368 chromosome, complete genomeT3SS effector NleF6e-109392
NC_013008:1715831:172623617262361726805570Escherichia coli O157:H7 str. TW14359 chromosome, complete genomenon-LEE-encoded type III effector6e-109392
NC_011601:1466496:147770114777011478270570Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeT3SS secreted effector NleF-like protein6e-109392
NC_002695:1794635:180567018056701806239570Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein6e-109392
NC_002655:2264773:228093822809382281507570Escherichia coli O157:H7 EDL933, complete genomehypothetical protein6e-109392
AP010958:2272919:228339422833942283963570Escherichia coli O103:H2 str. 12009 DNA, complete genomeT3SS secreted effector NleF-like protein9e-102369
NC_013353:2272919:228339422833942283963570Escherichia coli O103:H2 str. 12009, complete genomeT3SS effector NleF9e-102369
NC_013716:5141269:515348751534875154065579Citrobacter rodentium ICC168, complete genomeT3SS effector protein NleF2e-92337
NC_013364:1997891:200927420092742009630357Escherichia coli O111:H- str. 11128, complete genome7e-63239
NC_017319:192482:220947220947221084138Shigella flexneri 2002017 plasmid pSFxv_1, complete sequencehypothetical protein1e-0653.1