Pre_GI: BLASTP Hits

Some Help

Query: NC_013929:3953046:3971544 Streptomyces scabiei 87.22 chromosome, complete genome

Start: 3971544, End: 3972242, Length: 699

Host Lineage: Streptomyces scabiei; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a soil bacterium which is the causative agent of scab disease and affects a variety of underground vegetables such as potato and radish. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015656:632960:640915640915641499585Frankia symbiont of Datisca glomerata chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit3e-55214
NC_009921:565947:579529579529580140612Frankia sp. EAN1pec, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-50197
NC_013929:3953046:396964339696433970329687Streptomyces scabiei 87.22 chromosome, complete genomesigma factor2e-49195
NC_018750:3481476:348147634814763482261786Streptomyces venezuelae ATCC 10712, complete genomeputative RNA polymerase ECF-subfamily sigma factor3e-1788.6
NC_004129:195347:212505212505213086582Pseudomonas fluorescens Pf-5, complete genomeRNA polymerase sigma-70 factor5e-1168.2
NC_012704:376783:395308395308395919612Corynebacterium kroppenstedtii DSM 44385, complete genomeECF-family sigma factor D5e-1168.2
NC_009523:379705:396061396061396654594Roseiflexus sp. RS-1 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 factor1e-1066.6
NC_012660:165559:186028186028186600573Pseudomonas fluorescens SBW25 chromosome, complete genomeRNA polymerase sigma factor4e-0961.6
NC_019673:3041936:304282330428233043461639Saccharothrix espanaensis DSM 44229 complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily5e-0961.2
NC_013235:1325975:133005913300591330667609Nakamurella multipartita DSM 44233, complete genometranscriptional regulator, LuxR family9e-0960.5
NC_013093:2230171:223517522351752235852678Actinosynnema mirum DSM 43827, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0859.7
NC_012796:1645856:164776616477661648332567Desulfovibrio magneticus RS-1, complete genomeRNA polymerase ECF-type sigma factor3e-0858.5
NC_012704:1747539:176790617679061768508603Corynebacterium kroppenstedtii DSM 44385, complete genomeECF-family sigma factor H6e-0857.8
NC_014960:72737:752717527175828558Anaerolinea thermophila UNI-1, complete genomeRNA polymerase ECF-type sigma factor7e-0857.4
NC_015914:2769042:276844027684402769051612Cyclobacterium marinum DSM 745 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit1e-0756.6
NC_014355:3669470:367093436709343671530597Candidatus Nitrospira defluvii, complete genomeRNA polymerase sigma factor SigK (Sigma-K)1e-0756.6
NC_010995:2547164:254810525481052548695591Cellvibrio japonicus Ueda107, complete genomeRNA polymerase sigma-H factor (Sigma-30)3e-0755.5
NC_007333:3626510:363293636329363633556621Thermobifida fusca YX, complete genomeRNA polymerase sigma-70 factor4e-0755.1
NC_013446:2237854:225325022532502253825576Comamonas testosteroni CNB-2, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily7e-0754.3
NC_014311:1106871:112273411227341123375642Ralstonia solanacearum PSI07 chromosome, complete genomeRNA polymerase sigma factor, sigma-249e-0753.9
NC_014210:5752651:575645957564595757085627Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,RNA polymerase, sigma-24 subunit, ECF subfamily2e-0653.1
NC_012660:1579204:161309716130971613678582Pseudomonas fluorescens SBW25 chromosome, complete genomeRNA polymerase sigma factor AlgU2e-0653.1
NC_008278:132000:146785146785147303519Frankia alni ACN14a, complete genomePutative RNA polymerase ECF-subfamily sigma factor1e-0653.1
NC_009659:1024201:102623410262341026812579Janthinobacterium sp. Marseille chromosome, complete genomeRNA polymerase sigma factor1e-0653.1
NC_012590:193895:211507211507212055549Corynebacterium aurimucosum ATCC 700975, complete genomeECF-family sigma factor C3e-0652.4
NC_014931:1642179:165110916511091651702594Variovorax paradoxus EPS chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0652