Pre_GI: BLASTP Hits

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Query: NC_013890:1142500:1153526 Dehalococcoides sp. GT chromosome, complete genome

Start: 1153526, End: 1154782, Length: 1257

Host Lineage: Dehalococcoides mccartyi; Dehalococcoides; Dehalococcoidaceae; Dehalococcoidales; Chloroflexi; Bacteria

General Information: Temp: Mesophile; Habitat: Fresh water, Groundwater. Dehalococcoides sp. GT was isolated from an chloroethene-contaminated aquifer. This strain can dechlorinate trichloroethene and vinyl chloride. This organism was isolated from environments contaminated with organic chlorinated chemicals such as tetrachloroethene (PCE) and trichloroethane (TCE), common contaminants in the anaerobic subsurface. There are at least 15 organisms from different metabolic groups, halorespirators, acetogens, methanogens and facultative anaerobes, that are able to metabolize PCE. Some of these organisms couple dehalogenation to energy conservation and utilize PCE as the only source of energy while others dehalogenate tetrachloroethene fortuitously. This non-methanogenic, non-acetogenic culture is able to grow with hydrogen as the electron donor, indicating that hydrogen/PCE serves as an electron donor/acceptor for energy conservation and growth. This organism can only grow anaerobically in the presence of hydrogen as an electron donor and chlorinated compounds as electron acceptors. Dehalococcoides ethenogenes is typically found at sites contaminated with chlorinated solvents, and have been independently isolated in dozens of sites across the USA.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020387:1257163:1268633126863312698891257Dehalococcoides mccartyi BTF08, complete genomeDNA methyltransferase0867
NC_013552:1187299:1199281119928112005371257Dehalococcoides sp. VS, complete genomeadenine-specific DNA methylase0867
NC_013037:1072266:1087955108795510891931239Dyadobacter fermentans DSM 18053, complete genomeadenine-specific DNA methylase2e-89329
NC_012030:345837:3556403556403570011362Halorubrum lacusprofundi ATCC 49239 plasmid pHLAC01, completeadenine-specific DNA methylase8e-51201
NC_005810:4306716:4316108431610843174391332Yersinia pestis biovar Microtus str. 91001, complete genomemodification methylase1e-42174
NC_008150:4373722:4383291438329143846161326Yersinia pestis Antiqua, complete genomemodification methylase4e-42172
NC_008149:318860:3266573266573279821326Yersinia pestis Nepal516, complete genomemodification methylase4e-42172
NC_003143:398748:4074494074494087741326Yersinia pestis CO92, complete genomemodification methylase4e-42172
NC_010159:1288000:1295481129548112968061326Yersinia pestis Angola, complete genomemodification methylase4e-42172
NC_004088:4202247:4211816421181642131411326Yersinia pestis KIM, complete genomemethyltransferase4e-42172
NC_014029:452248:4609494609494622741326Yersinia pestis Z176003 chromosome, complete genomemodification methylase4e-42172
NC_017154:394401:4031014031014044261326Yersinia pestis D106004 chromosome, complete genomemodification methylase4e-42172
NC_017160:396600:4053014053014066261326Yersinia pestis D182038 chromosome, complete genomemodification methylase4e-42172
NC_017168:687471:6970406970406983651326Yersinia pestis A1122 chromosome, complete genomemodification methylase4e-42172
NC_017265:4065625:4075194407519440765191326Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,modification methylase4e-42172
NC_014376:317312:3242053242053254671263Clostridium saccharolyticum WM1 chromosome, complete genomemodification methylase4e-31135
NC_009381:3680638:3690229369022936913081080Yersinia pestis Pestoides F chromosome, complete genomemodification methylase1e-29131
NC_015381:3091500:3108388310838831098031416Burkholderia gladioli BSR3 chromosome 1, complete sequencehypothetical protein2e-23110
NC_009523:2769154:2772688277268827738691182Roseiflexus sp. RS-1 chromosome, complete genomehypothetical protein5e-22105
NC_007614:2517226:2526538252653825279411404Nitrosospira multiformis ATCC 25196 chromosome 1, completehypothetical protein1e-21104
NC_011146:382719:4013104013104025631254Geobacter bemidjiensis Bem, complete genomehypothetical protein2e-20100
NC_009767:5230790:5238059523805952395101452Roseiflexus castenholzii DSM 13941, complete genomeputative RNA methylase1e-1997.8
NC_010943:1884695:1894288189428818957121425Stenotrophomonas maltophilia K279a, complete genomeputative modification methylase7e-1995.5
NC_009952:1984955:2001559200155920026201062Dinoroseobacter shibae DFL 12, complete genomeputative modification methylase6e-1892.4
NC_009921:1736000:1751686175168617530771392Frankia sp. EAN1pec, complete genomeputative RNA methylase1e-1688.2
NC_011146:382719:3997013997014008521152Geobacter bemidjiensis Bem, complete genomeDNA methylase N-4/N-6 domain protein4e-1686.3
NC_002689:1228061:124876412487641249051288Thermoplasma volcanium GSS1, complete genomeStand-alone version of the C-terminal domain of adenine-specific modification methylase6e-1685.5
NC_005835:1773482:1786343178634317875751233Thermus thermophilus HB27, complete genomehypothetical protein5e-1479.3
NC_000909:1408276:1416977141697714185691593Methanocaldococcus jannaschii DSM 2661, complete genomemodification methylase, type II R/M system1e-1378.2
NC_012804:141914:1532251532251546221398Thermococcus gammatolerans EJ3, complete genomeSite-specific DNA-methyltransferase (cytosine-N(4)-specific)7e-1272
NC_010655:373437:3824743824743837691296Akkermansia muciniphila ATCC BAA-835, complete genomehypothetical protein2e-1170.9
NC_015571:2044000:2089976208997620912681293Porphyromonas gingivalis TDC60, complete genomehypothetical protein2e-1067.8
NC_018870:1953748:1964306196430619659101605Thermacetogenium phaeum DSM 12270 chromosome, complete genomemjaIIM: modification methylase3e-1067
NC_016026:296951:3041113041113053041194Micavibrio aeruginosavorus ARL-13 chromosome, complete genomehypothetical protein7e-1065.5
NC_015388:719669:7230887230887243621275Desulfobacca acetoxidans DSM 11109 chromosome, complete genomeDNA methylase N-4/N-6 domain protein4e-0963.2
NC_018607:1134900:115173911517391152506768Brachyspira pilosicoli B2904 chromosome, complete genomemodification methylase4e-0962.8
NC_018604:1329228:1346064134606413476351572Brachyspira pilosicoli WesB complete genomeDNA methylase N-4/N-6 domain-containing protein6e-0962.4
NC_010998:111052:1183201183201195791260Rhizobium etli CIAT 652 plasmid pA, complete sequencehypothetical protein7e-0962
NC_007948:360199:387538387538387978441Polaromonas sp. JS666, complete genomehypothetical protein2e-0860.5
NC_014815:6616500:668118066811806682022843Micromonospora sp. L5 chromosome, complete genomeDNA methylase n-4/n-6 domain protein2e-0860.5
NC_016582:10159486:101712501017125010172203954Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative RNA methylase2e-0757.4
NC_015573:813000:8324588324588342901833Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein2e-0757
NC_013851:1866523:1874684187468418758741191Allochromatium vinosum DSM 180 chromosome, complete genomeDNA methylase N-4/N-6 domain protein9e-0755.1