Pre_GI: BLASTP Hits

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Query: NC_013890:1142500:1145200 Dehalococcoides sp. GT chromosome, complete genome

Start: 1145200, End: 1145817, Length: 618

Host Lineage: Dehalococcoides mccartyi; Dehalococcoides; Dehalococcoidaceae; Dehalococcoidales; Chloroflexi; Bacteria

General Information: Temp: Mesophile; Habitat: Fresh water, Groundwater. Dehalococcoides sp. GT was isolated from an chloroethene-contaminated aquifer. This strain can dechlorinate trichloroethene and vinyl chloride. This organism was isolated from environments contaminated with organic chlorinated chemicals such as tetrachloroethene (PCE) and trichloroethane (TCE), common contaminants in the anaerobic subsurface. There are at least 15 organisms from different metabolic groups, halorespirators, acetogens, methanogens and facultative anaerobes, that are able to metabolize PCE. Some of these organisms couple dehalogenation to energy conservation and utilize PCE as the only source of energy while others dehalogenate tetrachloroethene fortuitously. This non-methanogenic, non-acetogenic culture is able to grow with hydrogen as the electron donor, indicating that hydrogen/PCE serves as an electron donor/acceptor for energy conservation and growth. This organism can only grow anaerobically in the presence of hydrogen as an electron donor and chlorinated compounds as electron acceptors. Dehalococcoides ethenogenes is typically found at sites contaminated with chlorinated solvents, and have been independently isolated in dozens of sites across the USA.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007356:1165760:116760111676011168218618Dehalococcoides sp. CBDB1, complete genomeDNA invertase/resolvase family protein1e-80299
NC_013552:1187299:119098811909881191572585Dehalococcoides sp. VS, complete genomeDNA invertase/resolvase3e-52204
NC_020387:1257163:126034012603401260924585Dehalococcoides mccartyi BTF08, complete genomeresolvase domain protein3e-52204
NC_020387:1257163:128091712809171281537621Dehalococcoides mccartyi BTF08, complete genomeresolvase domain protein2e-36151
NC_013890:1142500:115928511592851159887603Dehalococcoides sp. GT chromosome, complete genomeResolvase domain protein5e-30130
NC_002936:67896:752267522675843618Dehalococcoides ethenogenes 195, complete genomeresolvase domain protein2e-2099.4
NC_009455:53000:757857578576420636Dehalococcoides sp. BAV1 chromosome, complete genomeresolvase domain-containing protein6e-1787.4
NC_002936:797110:815014815014815649636Dehalococcoides ethenogenes 195, complete genomeresolvase domain protein6e-1787.4
NC_002936:253760:267602267602268237636Dehalococcoides ethenogenes 195, complete genomeresolvase domain protein6e-1787.4
NC_014923:3968000:398218239821823982778597Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeResolvase domain8e-1270.5
NC_009720:1248866:126996712699671270605639Xanthobacter autotrophicus Py2, complete genomeresolvase domain-containing protein7e-1270.5
NC_008009:5044612:505263750526375053242606Acidobacteria bacterium Ellin345, complete genomeResolvase-like1e-1169.3
NC_008009:5044612:506334850633485063953606Acidobacteria bacterium Ellin345, complete genomeResolvase-like1e-1169.3
NC_015147:9761:230472304723577531Arthrobacter phenanthrenivorans Sphe3 plasmid pASPHE302, completesite-specific recombinase, DNA invertase Pin2e-1065.9
NC_008009:1408000:141704414170441417667624Acidobacteria bacterium Ellin345, complete genomeResolvase-like2e-1065.9
NC_015942:763500:775184775184775762579Acidithiobacillus ferrivorans SS3 chromosome, complete genomeResolvase domain-containing protein3e-1065.1
NC_013456:2984491:299238029923802992952573Vibrio sp. Ex25 chromosome 1, complete genomeresolvase N-terminal domain protein4e-1064.7
NC_002689:1548000:155904915590491559654606Thermoplasma volcanium GSS1, complete genomeSite-specific recombinase, DNA invertase Pin-related5e-1064.3
NC_015146:144565:148300148300148878579Arthrobacter phenanthrenivorans Sphe3 plasmid pASPHE301, completesite-specific recombinase, DNA invertase Pin6e-1063.9
NC_006322:4149500:4174019417401941752631245Bacillus licheniformis ATCC 14580, complete genomeSpoIVCA4e-0961.6
NC_006270:4149004:4173904417390441751481245Bacillus licheniformis ATCC 14580, complete genomesite-specific DNA recombinase4e-0961.6
NC_011891:17940:225982259823185588Anaeromyxobacter dehalogenans 2CP-1, complete genomeResolvase domain protein5e-0961.2
NC_010682:2642269:265589026558902656480591Ralstonia pickettii 12J chromosome 1, complete sequenceResolvase domain9e-0960.1
NC_002689:696500:699600699600700142543Thermoplasma volcanium GSS1, complete genomeSite-specific recombinase, DNA invertase Pin-related1e-0860.1
NC_008538:46469:550515505155671621Arthrobacter sp. FB24 plasmid 2, complete sequenceResolvase-like protein1e-0859.7
NC_012856:2266187:227986322798632280453591Ralstonia pickettii 12D chromosome 1, complete genomeResolvase domain protein4e-0858.2
NC_013411:597235:6001286001286015161389Geobacillus sp. Y412MC61, complete genomeResolvase domain protein5e-0857.8
NC_014915:2963500:3002419300241930038071389Geobacillus sp. Y412MC52 chromosome, complete genomeResolvase domain protein5e-0857.8
NC_010995:1417329:143561314356131436203591Cellvibrio japonicus Ueda107, complete genomeinvertase/recombinase like protein5e-0857.8
NC_007512:944941:972563972563973159597Pelodictyon luteolum DSM 273, complete genomeinvertase/recombinase like protein7e-0857
NC_010511:915313:926278926278926835558Methylobacterium sp. 4-46 chromosome, complete genomeresolvase domain-containing protein9e-0857
NC_014008:1463795:147254714725471473173627Coraliomargarita akajimensis DSM 45221 chromosome, complete genomeResolvase domain protein1e-0756.6
NC_017337:1107930:1107930110793011093151386Staphylococcus aureus subsp. aureus ED133 chromosome, completePhage integrase1e-0756.2
NC_011837:3272752:3294545329454532962001656Clostridium kluyveri NBRC 12016, complete genomehypothetical protein2e-0756.2
NC_015660:739040:7405367405367419271392Geobacillus thermoglucosidasius C56-YS93 chromosome, completeResolvase domain-containing protein3e-0755.1
NC_015422:2078618:2093031209303120944101380Alicycliphilus denitrificans K601 chromosome, complete genomeresolvase domain-containing protein3e-0755.1
NC_013456:2528284:253422625342262534834609Vibrio sp. Ex25 chromosome 1, complete genomeresolvase putative4e-0754.7
NC_010338:1394550:140808814080881408630543Caulobacter sp. K31, complete genomeResolvase domain6e-0754.3
NC_011586:268927:317739317739318224486Acinetobacter baumannii AB0057 chromosome, complete genomeinvertase/recombinase protein6e-0754.3
NC_010611:240839:255477255477255962486Acinetobacter baumannii ACICU, complete genomesite-specific recombinase, DNA invertase Pin protein6e-0754.3
NC_012988:769981:793382793382794002621Methylobacterium extorquens DM4, complete genomeresolvase6e-0753.9
NC_012988:769981:782110782110782730621Methylobacterium extorquens DM4, complete genomeresolvase6e-0753.9
NC_014217:800406:8029988029988047251728Starkeya novella DSM 506 chromosome, complete genomeResolvase domain protein7e-0753.9
NC_015853:1:101731017310730558Acidithiobacillus caldus SM-1 plasmid pLAtc2, complete sequencerecombinase8e-0753.5
NC_007626:3393940:342955834295583430121564Magnetospirillum magneticum AMB-1, complete genomeSite-specific recombinase1e-0653.5
NC_010125:2998619:3006108300610830077691662Gluconacetobacter diazotrophicus PAl 5, complete genomeputative DNA recombinase1e-0653.1
NC_013722:2810721:2842626284262628440141389Xanthomonas albilineans, complete genomeputative site-specific integrase protein1e-0653.1
NC_014910:1912552:1921502192150219228811380Alicycliphilus denitrificans BC chromosome, complete genomeresolvase domain protein2e-0652.8
NC_009454:136468:1560681560681575431476Pelotomaculum thermopropionicum SI, complete genomehypothetical protein2e-0652.8
NC_014366:2826575:2833647283364728350021356Gamma proteobacterium HdN1, complete genomePredicted site-specific recombinase2e-0652.8
NC_011365:1103927:1118847111884711205561710Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomerecombinase2e-0652.4
NC_013521:3204250:324246732424673243060594Sanguibacter keddieii DSM 10542, complete genomesite-specific recombinase, DNA invertase Pin2e-0652.4
NC_016812:3641786:364349636434963644047552Sinorhizobium fredii HH103, complete genometransposon Tn552 DNA-invertase binR2e-0652.4
NC_010125:955863:9861399861399878451707Gluconacetobacter diazotrophicus PAl 5, complete genomeputative resolvase2e-0652.4
NC_013850:2182337:224002122400212240590570Klebsiella variicola At-22 chromosome, complete genomeResolvase domain protein3e-0652
NC_007626:3522265:359093035909303591538609Magnetospirillum magneticum AMB-1, complete genomeSite-specific recombinase3e-0652
NC_021182:1911088:192520819252081925777570Clostridium pasteurianum BC1, complete genomesite-specific recombinase, DNA invertase Pin3e-0651.6
NC_011894:6888562:689656168965616897118558Methylobacterium nodulans ORS 2060, complete genomeResolvase domain protein3e-0651.6
NC_011662:2374955:238635323863532386928576Thauera sp. MZ1T, complete genomeResolvase domain protein3e-0651.6
NC_010125:2884762:2898971289897129007551785Gluconacetobacter diazotrophicus PAl 5, complete genomeputative DNA recombinase4e-0651.6
NC_014549:14000:260192601926693675Arthrobacter arilaitensis Re117 plasmid pRE117-1, completeputative resolvase5e-0651.2
NC_015259:673662:684998684998685570573Polymorphum gilvum SL003B-26A1 chromosome, complete genomeInvertase recombinase-like protein5e-0651.2
NC_008347:1636660:164962816496281650176549Maricaulis maris MCS10, complete genomeResolvase5e-0651.2
NC_012491:3736167:3770304377030437719441641Brevibacillus brevis NBRC 100599, complete genomeputative integrase6e-0650.8
NC_009972:606393:6089936089936103811389Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome5e-0650.8
NC_011083:2847318:288963028896302890193564Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,DNA-invertase hin7e-0650.4
NC_010943:1938136:1942507194250719438771371Stenotrophomonas maltophilia K279a, complete genomeputative recombinase/resolvase7e-0650.4
NC_011094:2791719:282196128219612822533573Salmonella enterica subsp. enterica serovar Schwarzengrund strDNA-invertase hin7e-0650.4
NC_010102:2862178:287925728792572879829573Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein7e-0650.4
NC_009495:2479465:2521384252138425230031620Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeresolvase7e-0650.4
NC_018876:587094:596638596638597261624Methanolobus psychrophilus R15 chromosome, complete genomeputative DNA-invertase (Site-specific recombinase)8e-0650.4
NC_016624:112919:112919112919113497579Azospirillum lipoferum 4B plasmid AZO_p5, complete sequencesite-specific DNA recombinase, ISAli20, Tn3 family1e-0550.1