Pre_GI: BLASTN Hits

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Query: NC_013716:2898434 Citrobacter rodentium ICC168, complete genome

Start: 2898434, End: 2917099, Length: 18666

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_021150:3505234*3505234352968724454Azotobacter vinelandii CA6, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_012560:3505235*3505235352968824454Azotobacter vinelandii DJ, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_010551:25378762537876256370525830Burkholderia ambifaria MC40-6 chromosome 1, complete sequence9e-0660BLASTN svgBLASTP svg
NC_008390:26436532643653267440130749Burkholderia cepacia AMMD chromosome 1, complete sequence9e-0660BLASTN svgBLASTP svg
NC_012724:31004303100430312207221643Burkholderia glumae BGR1 chromosome 1, complete genome9e-0660BLASTN svgBLASTP svg
NC_010804:25186952518695254148822794Burkholderia multivorans ATCC 17616 chromosome 1, complete9e-0660BLASTN svgBLASTP svg
NC_010622:23859322385932240909923168Burkholderia phymatum STM815 chromosome 1, complete sequence9e-0660BLASTN svgBLASTP svg
NC_009076:11025001102500112459922100Burkholderia pseudomallei 1106a chromosome I, complete sequence9e-0660BLASTN svgBLASTP svg
NC_007434:13225001322500135459932100Burkholderia pseudomallei 1710b chromosome I, complete sequence9e-0660BLASTN svgBLASTP svg
NC_009074:10920001092000111222420225Burkholderia pseudomallei 668 chromosome I, complete sequence9e-0660BLASTN svgBLASTP svg
NC_007510:28051212805121282621621096Burkholderia sp. 383 chromosome 1, complete sequence9e-0660BLASTN svgBLASTP svg
NC_013716:4306695*4306695439827491580Citrobacter rodentium ICC168, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_012779:26648492664849268361918771Edwardsiella ictaluri 93-146, complete genome1e-26129BLASTN svgBLASTP svg
NC_013508:2587913*2587913262259934687Edwardsiella tarda EIB202, complete genome1e-26129BLASTN svgBLASTP svg
NC_020181:92900092900096303034031Enterobacter aerogenes EA1509E, complete genome9e-0660BLASTN svgBLASTP svg
NC_015663:18690001869000191219543196Enterobacter aerogenes KCTC 2190 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_015663:52532425253242527565022409Enterobacter aerogenes KCTC 2190 chromosome, complete genome1e-158567BLASTN svgBLASTP svg
NC_015663:2807574*2807574283616128588Enterobacter aerogenes KCTC 2190 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_015968:32772173277217329768120465Enterobacter asburiae LF7a chromosome, complete genome3e-150539BLASTN svgBLASTP svg
NC_015968:33019583301958333436632409Enterobacter asburiae LF7a chromosome, complete genome7e-31143BLASTN svgBLASTP svg
NC_015963:11717811717814980332626Enterobacter asburiae LF7a plasmid pENTAS01, complete sequence1e-1075.8BLASTN svgBLASTP svg
NC_014306:35249803524980358375158772Erwinia billingiae Eb661, complete genome2e-31145BLASTN svgBLASTP svg
NC_012214:13555001355500137677021271Erwinia pyrifoliae Ep1/96, complete genome7e-31143BLASTN svgBLASTP svg
NC_010694:12508411250841127452923689Erwinia tasmaniensis, complete genome2e-31145BLASTN svgBLASTP svg
CU928145:2655989*2655989268823232244Escherichia coli 55989 chromosome, complete genome0868BLASTN svgBLASTP svg
NC_011748:2655989*2655989268823232244Escherichia coli 55989, complete genome0868BLASTN svgBLASTP svg
NC_008563:25658762565876258822422349Escherichia coli APEC O1, complete genome0886BLASTN svgBLASTP svg
NC_009800:2505872*2505872252809922228Escherichia coli HS, complete genome0741BLASTN svgBLASTP svg
NC_011750:2585015*2585015261198826974Escherichia coli IAI39 chromosome, complete genome0682BLASTN svgBLASTP svg
NC_000913:2455037*2455037248136126325Escherichia coli K12, complete genome0896BLASTN svgBLASTP svg
CP002516:1475521*1475521149709321573Escherichia coli KO11, complete genome0868BLASTN svgBLASTP svg
AP010958:2911741*2911741294759935859Escherichia coli O103:H2 str. 12009 DNA, complete genome7e-28133BLASTN svgBLASTP svg
NC_002655:3260500*3260500328246521966Escherichia coli O157:H7 EDL933, complete genome0690BLASTN svgBLASTP svg
NC_002695:3189425*3189425321610426680Escherichia coli O157:H7 str. Sakai, complete genome0690BLASTN svgBLASTP svg
NC_010473:2548946*2548946258173732792Escherichia coli str. K-12 substr. DH10B, complete genome0896BLASTN svgBLASTP svg
NC_007946:2593500*2593500261819924700Escherichia coli UTI89, complete genome0676BLASTN svgBLASTP svg
CP002185:2608000*2608000263106823069Escherichia coli W, complete genome0868BLASTN svgBLASTP svg
AC_000091:24624612462461248878526325Escherichia coli W3110 DNA, complete genome0896BLASTN svgBLASTP svg
NC_014839:253961*25396131222658266Pantoea sp. At-9b plasmid pPAT9B02, complete sequence2e-0661.9BLASTN svgBLASTP svg
NC_014841:24848724848727359925113Pantoea sp. At-9b plasmid pPAT9B04, complete sequence6e-0763.9BLASTN svgBLASTP svg
NC_012917:31980003198000322168023681Pectobacterium carotovorum subsp. carotovorum PC1, complete genome1e-26129BLASTN svgBLASTP svg
NC_013421:15453861545386156866923284Pectobacterium wasabiae WPP163, complete genome4e-20107BLASTN svgBLASTP svg
NC_015061:12519051251905128092529021Rahnella sp. Y9602 chromosome, complete genome4e-23117BLASTN svgBLASTP svg
NC_007973:27734272773427279771424288Ralstonia metallidurans CH34 chromosome 1, complete sequence6e-0763.9BLASTN svgBLASTP svg
NC_011083:25428762542876256885525980Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,01047BLASTN svgBLASTP svg
NC_006511:529424*52942455225122828Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC01031BLASTN svgBLASTP svg
NC_003198:2453074*2453074247785124778Salmonella enterica subsp. enterica serovar Typhi str. CT18,01039BLASTN svgBLASTP svg
NC_004631:53125453125455515123898Salmonella enterica subsp. enterica serovar Typhi Ty2, complete01039BLASTN svgBLASTP svg
NC_009052:25123732512373255632743955Shewanella baltica OS155, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_010658:2529033*2529033255581226780Shigella boydii CDC 3083-94, complete genome0733BLASTN svgBLASTP svg
NC_007613:2376974*2376974240022423251Shigella boydii Sb227, complete genome0733BLASTN svgBLASTP svg
NC_009785:1414892*1414892143928524394Streptococcus gordonii str. Challis substr. CH1, complete genome9e-1279.8BLASTN svgBLASTP svg
NC_021175:353292*35329237126317972Streptococcus oligofermentans AS 1.3089, complete genome9e-1279.8BLASTN svgBLASTP svg
NC_012925:1357783*1357783138009922317Streptococcus suis P1/7, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_015224:32917363291736331359921864Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,4e-1487.7BLASTN svgBLASTP svg
NC_010159:409500*40950045168242183Yersinia pestis Angola, complete genome4e-1487.7BLASTN svgBLASTP svg