Pre_GI: BLASTN Hits

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Query: NC_013716:1918664 Citrobacter rodentium ICC168, complete genome

Start: 1918664, End: 1943209, Length: 24546

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003198:1771432*1771432180593534504Salmonella enterica subsp. enterica serovar Typhi str. CT18,02458BLASTN svgBLASTP svg
NC_010067:11161481116148113933023183Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete01520BLASTN svgBLASTP svg
NC_014121:1589389*1589389162248733099Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete01336BLASTN svgBLASTP svg
NC_015663:3586836*3586836361030823473Enterobacter aerogenes KCTC 2190 chromosome, complete genome01267BLASTN svgBLASTP svg
NC_021066:839734*83973487672436991Raoultella ornithinolytica B6, complete genome01247BLASTN svgBLASTP svg
NC_004547:2470978*2470978249481623839Erwinia carotovora subsp. atroseptica SCRI1043, complete genome0904BLASTN svgBLASTP svg
NC_014500:2479814*2479814250755827745Dickeya dadantii 3937 chromosome, complete genome0898BLASTN svgBLASTP svg
NC_013508:1491945*1491945152068628742Edwardsiella tarda EIB202, complete genome0864BLASTN svgBLASTP svg
NC_013421:2613137*2613137263682223686Pectobacterium wasabiae WPP163, complete genome0856BLASTN svgBLASTP svg
NC_020064:2697116*2697116272016423049Serratia marcescens FGI94, complete genome0811BLASTN svgBLASTP svg
NC_012214:2221702*2221702227363551934Erwinia pyrifoliae Ep1/96, complete genome0787BLASTN svgBLASTP svg
NC_013961:1622616*1622616167386551250Erwinia amylovora, complete genome0739BLASTN svgBLASTP svg
NC_015224:2095816*2095816211873722922Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,0724BLASTN svgBLASTP svg
NC_010694:21380002138000218529147292Erwinia tasmaniensis, complete genome6e-168599BLASTN svgBLASTP svg
NC_004631:1182883*1182883121459931717Salmonella enterica subsp. enterica serovar Typhi Ty2, complete2e-124454BLASTN svgBLASTP svg
NC_010634:2252329*2252329227409821770Yersinia pseudotuberculosis PB1/+, complete genome5e-122446BLASTN svgBLASTP svg
NC_006155:23341222334122235510620985Yersinia pseudotuberculosis IP 32953, complete genome2e-115424BLASTN svgBLASTP svg
NC_020064:41255004125500414419318694Serratia marcescens FGI94, complete genome9e-99369BLASTN svgBLASTP svg
NC_012660:819381*81938184312223742Pseudomonas fluorescens SBW25 chromosome, complete genome1e-45192BLASTN svgBLASTP svg
NC_004547:2285092*2285092230801122920Erwinia carotovora subsp. atroseptica SCRI1043, complete genome2e-32149BLASTN svgBLASTP svg
NC_009434:3434381*3434381346411529735Pseudomonas stutzeri A1501, complete genome6e-29137BLASTN svgBLASTP svg
NC_020209:47504*4750412622978726Pseudomonas poae RE*1-1-14, complete genome1e-26129BLASTN svgBLASTP svg
NC_010645:558974*55897458259923626Bordetella avium 197N, complete genome1e-26129BLASTN svgBLASTP svg
NC_004578:1190000*1190000121945029451Pseudomonas syringae pv. tomato str. DC3000, complete genome1e-23119BLASTN svgBLASTP svg
NC_002927:960369*96036999159931231Bordetella bronchiseptica RB50, complete genome6e-23117BLASTN svgBLASTP svg
NC_002929:3305682*3305682333485129170Bordetella pertussis Tohama I, complete genome6e-23117BLASTN svgBLASTP svg
NC_009778:19029951902995192149318499Enterobacter sakazakii ATCC BAA-894, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_009078:86279686279689418031385Burkholderia pseudomallei 1106a chromosome II, complete sequence2e-1695.6BLASTN svgBLASTP svg
NC_009075:93778293778296831430533Burkholderia pseudomallei 668 chromosome II, complete sequence2e-1695.6BLASTN svgBLASTP svg
NC_006351:88165588165591405032396Burkholderia pseudomallei K96243 chromosome 2, complete sequence2e-1695.6BLASTN svgBLASTP svg
NC_014541:19968111996811202159924789Ferrimonas balearica DSM 9799 chromosome, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_007435:27012422701242273492033679Burkholderia pseudomallei 1710b chromosome II, complete sequence8e-1693.7BLASTN svgBLASTP svg
NC_015410:1202370*1202370122824825879Pseudomonas mendocina NK-01 chromosome, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_007643:4294818*4294818431506320246Rhodospirillum rubrum ATCC 11170, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_013446:45116024511602453459922998Comamonas testosteroni CNB-2, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_012912:44281114428111445683228722Dickeya zeae Ech1591, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_010995:764567*76456778991125345Cellvibrio japonicus Ueda107, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_009439:1174432*1174432119973625305Pseudomonas mendocina ymp, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_013716:5201097*5201097527659975503Citrobacter rodentium ICC168, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_012968:2000218*2000218202098120764Methylotenera mobilis JLW8, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_009348:2631759*2631759265138819630Aeromonas salmonicida subsp. salmonicida A449, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_013716:3512950*3512950355955346604Citrobacter rodentium ICC168, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015733:864959*86495989931634358Pseudomonas putida S16 chromosome, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_014733:2095996*2095996211863222637Methylovorus sp. MP688 chromosome, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_012969:2136243*2136243222535089108Methylovorus glucosetrophus SIP3-4 chromosome, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_015731:3658956*3658956368280423849Nitrosomonas sp. Is79A3 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_009792:46931524693152471999926848Citrobacter koseri ATCC BAA-895, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_010694:2189652*2189652221918829537Erwinia tasmaniensis, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_013850:26858352685835271732531491Klebsiella variicola At-22 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_013850:49933074993307502215628850Klebsiella variicola At-22 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_012856:29319952931995295427722283Ralstonia pickettii 12D chromosome 1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009792:36653693665369370602240654Citrobacter koseri ATCC BAA-895, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_001263:13786051378605140253323929Deinococcus radiodurans R1 chromosome 1, complete sequence2e-0765.9BLASTN svgBLASTP svg
NC_003197:39719053971905399451122607Salmonella typhimurium LT2, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_003198:38551573855157387914223986Salmonella enterica subsp. enterica serovar Typhi str. CT18,7e-0763.9BLASTN svgBLASTP svg
NC_004631:38419753841975386463222658Salmonella enterica subsp. enterica serovar Typhi Ty2, complete7e-0763.9BLASTN svgBLASTP svg
NC_011083:39856183985618400872023103Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,7e-0763.9BLASTN svgBLASTP svg
NC_014323:46656104665610471710351494Herbaspirillum seropedicae SmR1 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_014210:14403614403616380119766Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,3e-0661.9BLASTN svgBLASTP svg
NC_014121:50000695000069503057530507Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete3e-0661.9BLASTN svgBLASTP svg
NC_011769:24720224720227380526604Desulfovibrio vulgaris str. 'Miyazaki F', complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010804:2960352*2960352297848118130Burkholderia multivorans ATCC 17616 chromosome 1, complete3e-0661.9BLASTN svgBLASTP svg
NC_010102:39199993919999394268422686Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,3e-0661.9BLASTN svgBLASTP svg
NC_006905:37173063717306374009922794Salmonella enterica subsp. enterica serovar Choleraesuis str3e-0661.9BLASTN svgBLASTP svg