Pre_GI: BLASTP Hits

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Query: NC_013716:5201097:5269482 Citrobacter rodentium ICC168, complete genome

Start: 5269482, End: 5269871, Length: 390

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016822:2678691:2678691267869126800371347Shigella sonnei 53G, complete genomeIS4 orf8e-69258
NC_016822:1781644:1784123178412317854691347Shigella sonnei 53G, complete genomeIS4 orf8e-69258
NC_007384:1696831:1711913171191317132591347Shigella sonnei Ss046, complete genomeIS4 ORF8e-69258
NC_007384:2587876:2587876258787625892221347Shigella sonnei Ss046, complete genomeIS4 ORF9e-69258
NC_007384:4095016:4114725411472541160711347Shigella sonnei Ss046, complete genomeIS4 ORF9e-69258
NC_007613:4119771:4131701413170141330171317Shigella boydii Sb227, complete genomeIS4 ORF4e-68256
NC_011751:4992500:5010215501021550115611347Escherichia coli UMN026 chromosome, complete genomeputative IS4 transposase; KpLE2 phage-like element6e-68255
NC_004337:3590323:3938517393851739398631347Shigella flexneri 2a str. 301, complete genomeIS4 ORF5e-68255
NC_017328:3655876:3674947367494736762931347Shigella flexneri 2002017 chromosome, complete genomeIS4 ORF5e-68255
NC_004741:4132056:4132056413205641333841329Shigella flexneri 2a str. 2457T, complete genomeIS4 orf5e-68255
NC_008258:269806:2883692883692897151347Shigella flexneri 5 str. 8401, complete genomeIS4 ORF5e-68255
NC_000913:4494773:4500126450012645014541329Escherichia coli K12, complete genomeKpLE2 phage-like element; IS4 predicted transposase5e-68255
NC_010473:4596500:4601934460193446032621329Escherichia coli str. K-12 substr. DH10B, complete genomeKpLE2 phage-like element; IS4 predicted transposase5e-68255
AC_000091:4501430:4506783450678345081111329Escherichia coli W3110 DNA, complete genomeIS4 predicted transposase5e-68255
NC_012759:4433500:4438861443886144401891329Escherichia coli BW2952 chromosome, complete genomeKpLE2 phage-like element; IS4 putative transposase5e-68255
NC_012947:3917619:3928785392878539301131329Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completetransposase IS4 family protein5e-68255
NC_012967:4473368:4483995448399544853231329Escherichia coli B str. REL606 chromosome, complete genomeIS4 putative transposase5e-68255
NC_017328:3935185:3943321394332139446491329Shigella flexneri 2002017 chromosome, complete genomeIS4 ORF2e-67253
NC_004337:3590323:3917660391766039190061347Shigella flexneri 2a str. 301, complete genomeIS4 ORF4e-66249
NC_004431:3513147:3532771353277135341201350Escherichia coli CFT073, complete genomeTransposase insG for insertion sequence element IS43e-61233
NC_017047:4379989:4402292440229244036141323Rahnella aquatilis HX2 chromosome, complete genometransposase IS4 family protein4e-28123
NC_015061:3725921:3730563373056337318851323Rahnella sp. Y9602 chromosome, complete genometransposase IS4 family protein4e-28123
NC_017047:3793000:3795224379522437965461323Rahnella aquatilis HX2 chromosome, complete genometransposase IS4 family protein4e-28123
NC_011312:3060371:3060371306037130616961326Aliivibrio salmonicida LFI1238 chromosome chromosome 1, completetransposase3e-27120
NC_004459:1679335:168432316843231684952630Vibrio vulnificus CMCP6 chromosome I, complete sequenceTransposase and inactivated derivatives6e-24109
NC_004547:913553:921906921906922199294Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative transposase (partial)7e-1682.4
NC_005139:2201820:2256801225680122581381338Vibrio vulnificus YJ016 chromosome I, complete sequencetransposase and inactivated derivative8e-1579
NC_021150:3303959:3306478330647833076441167Azotobacter vinelandii CA6, complete genomeTransposase, IS4 protein1e-1375.5
NC_012560:3303961:3306480330648033076461167Azotobacter vinelandii DJ, complete genomeTransposase, IS4 protein1e-1375.5
NC_012912:242709:2468462468462481711326Dickeya zeae Ech1591, complete genometransposase IS4 family protein3e-1373.6
NC_012912:1788308:1815719181571918170441326Dickeya zeae Ech1591, complete genometransposase IS4 family protein3e-1373.6
NC_013440:3947493:3961875396187539632241350Haliangium ochraceum DSM 14365, complete genometransposase IS4 family protein6e-1372.8
NC_013716:4408201:4408201440820144095381338Citrobacter rodentium ICC168, complete genomeISCro3 transposase9e-1268.9
NC_010625:229478:2380132380132393411329Burkholderia phymatum STM815 plasmid pBPHY01, complete sequencetransposase IS4 family protein4e-1063.5
NC_015663:770485:775341775341775568228Enterobacter aerogenes KCTC 2190 chromosome, complete genomeISCro3 transposase3e-0960.8
NC_015556:130437:146600146600147196597Pseudomonas fulva 12-X chromosome, complete genome4e-0856.6
NC_013716:1178383:118989111898911190355465Citrobacter rodentium ICC168, complete genome3e-0753.9
NC_003155:365500:3710093710093726371629Streptomyces avermitilis MA-4680, complete genomeIS4 family transposase4e-0753.5
NC_009254:700891:7008917008917020991209Burkholderia vietnamiensis G4 chromosome 3, complete sequencetransposase, IS4 family protein8e-0752.8
NC_009255:213245:2203062203062215141209Burkholderia vietnamiensis G4 chromosome 2, complete sequencetransposase, IS4 family protein8e-0752.8
NC_009256:2945059:2946142294614229473501209Burkholderia vietnamiensis G4 chromosome 1, complete sequencetransposase, IS4 family protein8e-0752.8
NC_015422:4508028:4509693450969345108981206Alicycliphilus denitrificans K601 chromosome, complete genometransposase IS4 family protein1e-0652
NC_009921:4035225:4059514405951440607791266Frankia sp. EAN1pec, complete genometransposase IS4 family protein2e-0651.6
NC_008027:5576458:5584103558410355854881386Pseudomonas entomophila L48, complete genometransposase, IS4 family3e-0650.4